BiocPy/BiocFrame

Issues

• Switch from `pandas` to `polars` for more efficient downstream tasks, e.g. faster queries

  #107 opened 6 months ago by abearab
  2

• groupby operation

  #4 opened a year ago by jkanche
  0

• Suggested fixes that I noticed

  #67 opened a year ago by LTLA
  0

• Either have `len()` be the number of columns, or rename `mcols()`

  #68 opened a year ago by LTLA
  2

• Add a `replace_columns()` function

  #65 opened a year ago by LTLA
  0

• `set_column` is always in-place

  #64 opened a year ago by LTLA
  1

• I see a `column` but no `get_column`

  #60 opened a year ago by LTLA
  0

• Convert to a functional style

  #51 opened a year ago by LTLA
  1

• `BiocFrame.__setitem__` doesn't work with row indices

  #57 opened a year ago by LTLA
  0

• Generalize row/column index subsetting to any `Sequence[int]`

  #26 opened a year ago by LTLA
  0

• Don't attach row names during subsetting

  #50 opened a year ago by LTLA
  0

• really need a `concat` method

  #38 opened a year ago by jkanche
  0

• pandas is not quite optional as `to_pandas()` has `DataFrame` as a type hint

  #39 opened a year ago by LTLA
  1

• nested BiocFrame construction adds unnecessary row names

  #36 opened a year ago by LTLA
  0

• The "DataFrame" type hint does not work as is

  #32 opened a year ago by DiDeoxy
  1

• BiocFrame __init__ is missing a docstring

  #33 opened a year ago by DiDeoxy
  0

• Make `from_pandas` a classmethod

  #31 opened a year ago by DiDeoxy
  1

• `__repr__` method shows duplicated rows

  #27 opened a year ago by LTLA
  0

• Type of column is incorrectly coerced to list by `column`

  #24 opened a year ago by LTLA
  1

• Things to do

  #21 opened a year ago by LTLA
  0

• [polars](https://www.pola.rs/) as an alternative

  #5 opened a year ago by jkanche
  0

• slicing an empty frame

  #11 opened a year ago by jkanche
  0

• Slicing doesn't handle nested BiocFrames correctly

  #12 opened a year ago by LTLA
  0

• subset by list of booleans

  #3 opened a year ago by jkanche
  1

• add index alias for compatability with pandas

  #9 opened a year ago by keviny2
  4

• Properties don't account for possibility of `None` value in type hinting

  #6 opened 2 years ago by DiDeoxy
  3