Warning when including BiocManager code in vignette
Closed this issue · 3 comments
Currently if any BiocManager code is included in a package vignette, BiocCheck returns a WARNING, e.g. as follows:
* Checking vignette directory...
* WARNING: BiocInstaller code found in vignette(s)
Found in file(s):
nnSVG.Rmd (line 39)
I have tried this both with eval=FALSE in the RMarkdown code block, and with commenting out the BiocManager line inside the code block.
Possibly BiocCheck is noticing any string with BiocManager included in the vignette, although I'm not completely sure.
We noticed this during my recent package submission at Bioconductor/Contributions#2543. (There are some links to build reports with additional details in this issue.)
Hi Lukas, @lmweber
Thank you for reporting.
This has been fixed in the branch of BiocCheck that will soon be merged to the default branch.
If you'd like to test, see the output branch.
Best,
Marcel
Thank you!