Bioconductor/BiocCheck

Issues

• Fails to print deprecated package names

  #217 opened 4 months ago by ChangqingW
  3

• Add check for `fnd` role in `DESCRIPTION` file

  #215 opened 4 months ago by LiNk-NY
  0

• Possible bug in .getTokenTextCode

  #214 opened 4 months ago by llrs
  1

• One test fails on PPC: Error in checkEqualsNumeric(9, .BiocCheck$getNum("warning")): Mean relative difference: 0.1111111

  #188 opened 2 years ago by barracuda156
  9

• duplicated check for Imports in DESCRIPTION but not in NAMESPACE

  #212 opened 7 months ago by LiNk-NY
  1

• Rd files with \docType{data} or \docType{class} should not be required to have a \value section

  #211 opened 8 months ago by hpages
  5

• Typo

  #210 opened 9 months ago by SamGG
  1

• Another set of packages that kill BiocCheck() before completion

  #203 opened 10 months ago by hpages
  5

• Stringent doi checking of CITATION in ` BiocCheckGitClone`

  #208 opened a year ago by boyiguo1
  1

• False positive warning during BiocCheck - Bioconductor software dependencies

  #207 opened a year ago by boyiguo1
  6

• bioc-devel mailing list check still not always accurate

  #205 opened a year ago by lshep
  4

• Add WARNING if package uses .Rnw vignettes

  #190 opened a year ago by jwokaty
  1

• Clarification on the regex used for detecting installation (of R packages?) on the vignette

  #192 opened a year ago by lcolladotor
  2

• BiocCheck() dies on some packages before completing

  #199 opened a year ago by hpages
  2

• False positive in .Rbuildignore check

  #197 opened a year ago by LiNk-NY
  17

• BiocCheck false positives

  #201 opened a year ago by hpages
  0

• Addressing "Checking if other packages can import this one" errors when packages providing functions are imported in NAMESPACE

  #200 opened a year ago by jmitchell81
  2

• False positive error about file sizes

  #198 opened a year ago by const-ae
  4

• include macros location when using Rdpack

  #196 opened a year ago by LiNk-NY
  1

• Error in unloadNamespace(pkg_ns)

  #195 opened a year ago by hpages
  0

• "Sweave Noweb syntax?" popup windows

  #193 opened a year ago by hpages
  1

• Error when checking for deprecated package usage

  #194 opened a year ago by catavallejos
  6

• What is codetoolsBioC ?

  #191 opened 2 years ago by grimbough
  1

• False positive checking for value section in Rd files

  #189 opened 2 years ago by grimbough
  2

• BiocCheck for function length fails if there is no R code

  #186 opened 2 years ago by lshep
  0

• Check of individual file sizes not accurate?

  #167 opened 2 years ago by lshep
  2

• vapply error on badViews on version 1.34.2

  #184 opened 2 years ago by lcolladotor
  4

• possible issue with unloadNamespace when running BiocChecks in parallel

  #180 opened 2 years ago by vjcitn
  3

• `BiocCheck` reports false function lengths

  #183 opened 2 years ago by kakopo
  3

• .RData files not caught by BiocCheckGitClone()

  #155 opened 3 years ago by hpages
  6

• `BiocCheck`: failing on bioconductor devel

  #174 opened 2 years ago by bschilder
  3

• Make BiocCheck output legible.

  #179 opened 2 years ago by nick-robo
  2

• moving from CRAN to Bioconductor

  #177 opened 2 years ago by lshep
  0

• More than 2 YAML front matter delimiters ... false positive in profileScoreDist

  #178 opened 2 years ago by vjcitn
  2

• Use IS_BIOC_BUILD_MACHINE envvar to identify BBS

  #176 opened 2 years ago by LiNk-NY
  1

• Warning in nzchar(fpath) && !is.na(fpath)

  #171 opened 2 years ago by Shians
  2

• Tests failing with knitr 1.40

  #168 opened 2 years ago by nileshpatra
  1

• can crash if BiocPkgTools attached

  #158 opened 2 years ago by vjcitn
  3

• BiocCheck failed with error at coding practice check stage

  #165 opened 2 years ago by snikumbh
  4

• catch eval=F in vignettes

  #164 opened 2 years ago by LiNk-NY
  1

• T/F false positive

  #161 opened 2 years ago by lshep
  4

• Spacing after end-of-sentence in some messages

  #162 opened 2 years ago by mtmorgan
  0

• migrate documentation page links to contributions.bioconductor.org

  #157 opened 2 years ago by LiNk-NY
  0

• description length check / false positive

  #160 opened 3 years ago by lshep
  7

• Detailed Information does not seem correct

  #159 opened 3 years ago by lshep
  1

• BiocCheckGitClone output

  #156 opened 3 years ago by lshep
  1

• "Checking Package Dependencies" emits an obscure warning with BiocCheck 1.31.36

  #154 opened 3 years ago by hpages
  3

• Warning when including BiocManager code in vignette

  #152 opened 3 years ago by lmweber
  3

• too many reports of = for assignment

  #149 opened 3 years ago by vjcitn
  2

• `cat()` is appropriate inside S3 print methods

  #150 opened 3 years ago by mtmorgan
  1