manual build of vignette fails

[vjcitn]

Using render("BiocFileCache.Rmd", BiocStyle::html_document())

label: unnamed-chunk-25
delete 2 entries? (yes/no): yes
delete 2 files? (yes/no): yes
Quitting from lines 480-497 (BiocFileCache.Rmd) 
Error in bfcremove(bfc, rmMe) : all(rids %in% bfcrid(x)) is not TRUE
Selection: 0

I think the interruption to ask for permission to delete should be avoided.

In the following BiocFileCache version is 2.3.4 because I bumped it for my fork/branch.
But there have been no code changes.

> sessionInfo()
R Under development (unstable) (2021-11-10 r81171)
Platform: aarch64-apple-darwin20.6.0 (64-bit)
Running under: macOS Monterey 12.1

Matrix products: default
BLAS:   /Users/vincentcarey/R-dev-dist/lib/R/lib/libRblas.dylib
LAPACK: /Users/vincentcarey/R-dev-dist/lib/R/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] dplyr_1.0.7         BiocFileCache_2.3.4 dbplyr_2.1.1       
[4] BiocStyle_2.23.1    rmarkdown_2.11     

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.7          bslib_0.3.1         compiler_4.2.0     
 [4] pillar_1.6.4        BiocManager_1.30.16 jquerylib_0.1.4    
 [7] tools_4.2.0         bit_4.0.4           digest_0.6.29      
[10] memoise_2.0.1       RSQLite_2.2.9       jsonlite_1.7.2     
[13] evaluate_0.14       lifecycle_1.0.1     tibble_3.1.6       
[16] pkgconfig_2.0.3     rlang_0.4.12        cli_3.1.0          
[19] DBI_1.1.2           filelock_1.0.2      curl_4.3.2         
[22] yaml_2.2.1          xfun_0.29           fastmap_1.1.0      
[25] withr_2.4.3         httr_1.4.2          stringr_1.4.0      
[28] knitr_1.37          rappdirs_0.3.3      generics_0.1.1     
[31] vctrs_0.3.8         sass_0.4.0          bit64_4.0.5        
[34] tidyselect_1.1.1    glue_1.6.0          R6_2.5.1           
[37] fansi_0.5.0         bookdown_0.24       startup_0.16.0     
[40] blob_1.2.2          purrr_0.3.4         magrittr_2.0.1     
[43] htmltools_0.5.2     ellipsis_0.3.2      assertthat_0.2.1   
[46] utf8_1.2.2          stringi_1.7.6       cachem_1.0.6       
[49] crayon_1.4.2        Cairo_1.5-12.2  

[lshep]

@vjcitn We always confirm deleting files as good practice; the vignette should use ask=FALSE so that it does it automatically but I will check to confirm. I'm not sure why using render("BiocFileCache.Rmd", BiocStyle::html_document()) would cause an error but building/checking under R CMD build and R CMD check does not? This seems an odd behavior or environment of render?