Bioconductor/git-hooks

Bioconductor git hooks which are deployed on every Bioconductor package repository

Bioconductor git-hooks

This repository hosts the git hooks which are deployed on each Bioconductor package.

Naming convention

The name of the repository is git-hooks because of the way Bioconductor manages the it's git-server using gitolite. The hooks are meant to be placed in a directory called local, because of a design decision made in 2016 we called the directory which stores the git hooks local/hooks/repo-specific. Hence, the name git-hooks, to describe what happens in them.

This repository acts as a submodule within the Bioconductor git server which manages the hooks.

Hooks

The hooks are written in Python. They currently check each package for,

Pre-receive hooks

1. Bad version numbers: prevent_bad_version_numbers.py

2. Duplicate commits: prevent_duplicate_commits.py

3. Merge conflicts: prevent_merge_markers.py

4. Large files: prevent_large_files.py

Post-receive hooks

1. New package build: new_package_build.py

2. RSS feed: rss_feed.py

Contact information

Bioconductor Core team maintainer@bioconductor.org

Nitesh Turaga nitesh@ds.dfci.harvard.edu

Martin Morgan martin.morgan@roswellpark.org