C-G-L

C-G-L's Stars

• DrewWham/Perceptual_tSNE

  Language:Python82

• aphanotus/borealis

  An R package for common activities in an integrative biology lab

  Language:R51

• SpeciationBehaviour/visual_preference_heurippa_linaresi

  Analysis details for “Light environment influences mating behaviours during the early stages of divergence in tropical butterflies”

  Language:R2

• annaorteu/wrath

  Wrath: WRapped Analysis of Tagged Haplotypes

  Language:Python82

• albumentations-team/albumentations

  Fast and flexible image augmentation library. Paper about the library: https://www.mdpi.com/2078-2489/11/2/125

  Language:Python14.4k1.7k

• cjabradshaw/CoelacanthEvolution

  Analyses of coelacanth morphometrics, disparity, phylogeny, and rate of evolution

  Language:R51

• yanzhu-ji/avian_indels_and_genome-size

  Language:Shell21

• evolgenomics/haplotagging

  Code and binaries related to processing haplotagging data

  Language:C++132

• charlottewright/buscopainter

  Painting chromosomes using BUSCOs

  2

• zy-optimistic/GAEP

  A genome assembly assessment pipeline.

  Language:Perl376

• wodanaz/Genomewide_alignment

  I will use Cactus to create a genome wide alignment

  42

• bredeson/pfb2022

  Programming for Biology Class @ CSHL 2022

  Language:Python21

• phyloRNN/phyloRNN

  Estimation of evolutionary rates using RNN

  Language:Python3

• epigen/genome_tracks

  A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.

  Language:Python191

• npaulat/bat_ht

  Workflow for computational identification of putative horizontally transferred DNA transposons involving 37 bat species.

  Language:Python52

• Matgend/TDIP

  R package for imputing missing values in trait datasets.

  Language:R51

• faressoft/terminalizer

  🦄 Record your terminal and generate animated gif images or share a web player

  Language:JavaScript15.4k501

• sans-dev/inselect

  Cross-platform desktop app for the segmentation and annotation of images of museum objects

  2

• phenopype/phenopype

  A phenotyping pipeline for Python

  Language:Python104

• mluerig/cv-eeb

  Website: International Forum for Computer Vision in EEB

  Language:SCSS2

• bavomaes/color-palette-generator

  Program that gets a standardized color palette out of an image

  Language:JavaScript21

• hiweller/recolorize_examples

  Language:R83

• eleanorcaves/AcuityView

  This code provides a simple method for representing a visual scene (i.e. modifying an image) as it may be seen by an animal with less acute vision.

  Language:R33

• agporto/ml-morph

  Machine-learning-based morphometrics

  Language:Python3111

• StevenVB12/patternize

  An R package for quantifying color pattern variation

  Language:R328

• hiweller/recolorize

  Simplifying and remapping image colors.

  Language:R392

• rpetit3/fastq-dl

  Download FASTQ files from SRA or ENA repositories.

  Language:Python28524