Pinned Repositories
2ndGS_Pipelines
Perl and R source codes for next generation (the second generation) sequencing data analysis by integrating lots of open-source softwares.
Gametogenesis_Embryogenesis
Mammalian gametogenesis and embryogenesis
m6A-SAC-seq
Perl, Bash shell, and R scripts for m6A-SAC-seq data analysis.
MAPBS
An All-in-one and Easy-to-use DNA Methylation Analysis Pipeline for Bulk and Single-cell BS-Seq Data
MDisProtein
Modelling and Prediction of protein distribution on subcellular and suborganelle level.
PipiDABS
PipiDABS: A Comprehensive and User-Friendly Pipeline for Downstream DNA Methylation Analysis of High-throughput Bisulfite Sequencing Data.
Sequencing_DNA_RNA_Protein
Perl, R, Python, and Bash Shell source codes for high-throughput sequencing (the 2nd, 3rd, and 4th generation sequencing for DNA, RNA, and Protein) data analysis by integrating lots of open-source tools or softwares.
SomeRecords
Some very useful records for me.
xQTLs
Scripts for various molecular quantitative trait locus (xQTL) analysis.
xQTM
molecular quantitative trait methylation (QTM) analysis
CTLife's Repositories
CTLife/2ndGS_Pipelines
Perl and R source codes for next generation (the second generation) sequencing data analysis by integrating lots of open-source softwares.
CTLife/SomeRecords
Some very useful records for me.
CTLife/m6A-SAC-seq
Perl, Bash shell, and R scripts for m6A-SAC-seq data analysis.
CTLife/MDisProtein
Modelling and Prediction of protein distribution on subcellular and suborganelle level.
CTLife/PipiDABS
PipiDABS: A Comprehensive and User-Friendly Pipeline for Downstream DNA Methylation Analysis of High-throughput Bisulfite Sequencing Data.
CTLife/ART_Epigeome
Source codes for the ART_Epigenome project, "Epigenetic Consequences of Assisted Reproduction in the Human Offspring".
CTLife/NucleosomeTurnover
Upstream and Downstream of locus-specific nucleosome turnover in adult mouse cardiomyocytes (as a instance or representation of non-proliferating mammalian cells).
CTLife/Scripts_Protocols
CTLife/xQTLs
Scripts for various molecular quantitative trait locus (xQTL) analysis.
CTLife/CTLife.github.io
My Personal Website and Blog.
CTLife/EED-HDAC
Bioinformatics analysis in EED-HDAC project, "Polycomb EED Orchestration of Heart Maturation is PRC2-independent".
CTLife/Sequencing_DNA_RNA_Protein
Perl, R, Python, and Bash Shell source codes for high-throughput sequencing (the 2nd, 3rd, and 4th generation sequencing for DNA, RNA, and Protein) data analysis by integrating lots of open-source tools or softwares.
CTLife/MAPBS
An All-in-one and Easy-to-use DNA Methylation Analysis Pipeline for Bulk and Single-cell BS-Seq Data
CTLife/Opposite-Sex-Twins_Epigenome
Opposite-Sex-Twins_Epigenome
CTLife/sgRNA
Design genom-wide sgRNAs by using CRISPRseek.
CTLife/xQTM
molecular quantitative trait methylation (QTM) analysis
CTLife/Gametogenesis_Embryogenesis
Mammalian gametogenesis and embryogenesis
CTLife/cfDNA-5hmC_LungCancer
Plasma cell-free DNA hydroxymethylomes discriminate disease state in EGFR-mutant non-small cell lung cancer.
CTLife/single-cell-5hmC
single-cell 5hmC-Seal with combinatorial split-pool barcoding