CTLife

CTLife's Stars

• mamba-org/mamba

  The Fast Cross-Platform Package Manager

  Language:C++7k461.8k368

• ossu/bioinformatics

  :microscope: Path to a free self-taught education in Bioinformatics!

  5.6k36924940

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k17111621

• MareesAT/GWA_tutorial

  A comprehensive tutorial about GWAS and PRS

  8582824333

• lindenb/jvarkit

  Java utilities for Bioinformatics

  Language:Java48928241133

• ewels/sra-explorer

  Web application to explore the Sequence Read Archive.

  Language:HTML20394429

• ksahlin/strobealign

  Aligns short reads using dynamic seed size with strobemers

  Language:C++1581117918

• nloyfer/wgbs_tools

  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

  Language:Python138117238

• cgroza/GraffiTE

  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

  Language:R1344427

• marbl/meryl

  A genomic k-mer counter (and sequence utility) with nice features.

  Language:C124114914

• ksahlin/ultra

  Long-read splice alignment with high accuracy

  Language:Python6042510

• GoekeLab/proActiv

  Estimation of Promoter Activity from RNA-Seq data

  Language:R5043614

• smithlabcode/dnmtools

  Tools for analyzing DNA methylation data

  Language:C++356779

• mhalushka/miRge3.0

  Comprehensive analysis of small RNA sequencing data

  Language:Python3029311

• shohei-kojima/MEGAnE

  MEGAnE

  Language:Python263243

• lilab-bioinfo/xQTLbiolinks

  xQTLbiolinks: an R package for integrative analysis with xQTL data

  Language:R16200

• agalitsyna/RedClib

  Red-C data processing

  Language:Nextflow13302

• dgarrimar/manta

  Non-parametric, asymptotic P-value computation for multivariate linear models

  Language:R13010

• 4dn-dcic/pairsqc

  QC report generator for Hi-C pairs file

  Language:HTML10432

• gusevlab/stratAS

  🌓 Allele specific analyses across cell states and conditions

  Language:R9245

• Ibvt/RNAnue

  RNAnue

  Language:C++85124

• guigolab/sqtlseeker2-nf

  An automated sQTL mapping pipeline using Nextflow

  Language:R6574

• christear/APAIQ_release

  released version of APAIQ

  Language:Python51111

• YY-TMU/InPACT

  A computational method designed to identify and quantify IPA sites via the examination of contextual sequence patterns and RNA-seq reads alignment.

  Language:Python4191

• bar-woolf/MVMRmode

  Language:R310

• CTLife/Scripts_Protocols

  Language:R310

• CTLife/xQTLs

  Scripts for various molecular quantitative trait locus (xQTL) analysis.

  Language:Perl3100

• CTLife/Sequencing_DNA_RNA_Protein

  Perl, R, Python, and Bash Shell source codes for high-throughput sequencing (the 2nd, 3rd, and 4th generation sequencing for DNA, RNA, and Protein) data analysis by integrating lots of open-source tools or softwares.

  Language:Perl2200

• guertinlab/Nascent_RNA_Methods

  Language:TeX2301

• CTLife/xQTM

  molecular quantitative trait methylation (QTM) analysis

  Language:Perl1101