nloyfer/wgbs_tools
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
PythonNOASSERTION
Issues
- 0
Bioconda integration
#80 opened by Manojbioinfo - 0
Galaxy wrapper
#79 opened by joachimwolff - 0
bam2pat-combine OT and OB?
#76 opened by chang-bwl - 0
modbam reads and hardclipping
#75 opened by jts - 2
beta_to_table: np.float deprecated in NumPy>=1.20
#72 opened by ssj1739 - 1
wgbstools for single base DNA methylation
#70 opened by hengbingao - 1
- 0
Nanopore wgbstools vis
#69 opened by AzlanNI - 1
Intersect (wgbstools view -L Atlas.U25.l4.hg19.bed Left_Ventricle_STL001.IGF2.pat.gz)
#68 opened by AzlanNI - 9
bam2pat support for nanopore data
#48 opened by Rodcarlessi - 6
Failed compiling cview
#65 opened by MinS1 - 1
init_genome error?
#66 opened by MinS1 - 0
- 1
segment sites mismatch
#64 opened by chang-bwl - 1
bam2pat FileNotFoundError
#54 opened by qyJING123 - 2
wgbstools convert is not working as expected
#59 opened by ekushele - 2
issue when use `beta_to_450k`
#56 opened by axxxxx08 - 1
Workflow question
#60 opened by gevro - 0
Question regarding generating bigger blocks in brain .beta files wgbstools segment
#61 opened by DieStok - 2
- 2
nanopore?
#22 opened by colindaven - 1
While running bam2pat on ML and MM tag containing bam file ,reads information is printed on the terminal.
#53 opened by vinodsinghjnu - 0
issue running wgbstools mix_pat
#55 opened by tomh1lll - 2
OSError: [Errno 22] while bam2pat
#47 opened by vinodsinghjnu - 4
init_genome error
#31 opened by lingchuanmeixi - 1
Missing last CPG site in chromosome
#41 opened by linhxxx - 9
find_markers for RRBS
#44 opened by AndriesDeKoker - 1
groups file format
#45 opened by assafgrw - 2
Find markers error
#51 opened by gibberwocky - 1
bam2pat invalid input argument empty bam file
#50 opened by sc2936 - 1
beta2blocks
#49 opened by gibberwocky - 4
genome "liftover" for pat format
#46 opened by NikolausMandlburgerCCRI - 1
Missing last CPG site in chromosome
#42 opened by linhxxx - 1
- 0
Non-standard 1-based start position in bed files
#37 opened by GWW - 2
find_markers error
#34 opened by dengyihan1464 - 1
Issue when collapsing beta files to the blocks
#33 opened by avielmiluz - 0
convert .fractional.bw data to pat or beta
#30 opened by avilella - 3
vis heatmap as a file export (pdf, etc.)
#29 opened by avilella - 1
Missing files while compiling
#26 opened by RoyBSimons - 7
Compiling error for homog...
#27 opened by hmyh1202 - 0
convert 450k data to beta or pat
#28 opened by avilella - 2
split_by_allele C>T SNPs at CpG sites
#25 opened by rnbatra - 4
split_by_allele and test_bimodal
#20 opened by rnbatra - 2
bam2pat Invalid input
#24 opened by rnbatra - 0
- 2
mbias_plot missing / broken by commit 3e5b9bf02f1
#18 opened by semenko - 2
- 2
issues with beta2bw.py
#19 opened by e-manduchi - 11
wgbstools segment error
#17 opened by gibberwocky