ewels/sra-explorer

Issues

• possible incorrect division by 100000

  #46 opened 7 months ago by djleite
  0

• Aspera and FTP links not properly generated for some libraries.

  #45 opened 8 months ago by pre-mRNA
  0

• Aspera commands for downloading FastQ files CMD don't show

  #44 opened 8 months ago by XUEbaogai0101
  2

• Add support for more download tools

  #43 opened a year ago by ewels
  0

• Search multiple accessions at once

  #42 opened 2 years ago by GrantHov
  0

• Mismatch with queried BioProject ID connecting to a different BioProject/Accession

  #41 opened 2 years ago by TromboneEngineer
  1

• Unable to download file

  #40 opened 2 years ago by jestlin15
  1

• cURL download for fastq files is smaller than expected.

  #39 opened 2 years ago by blizard-wizard
  1

• multiple GSM accessions as input

  #38 opened 3 years ago by FrAoJm
  2

• Bash code for downloading fastq files not working anymore

  #36 opened 3 years ago by niekwit
  4

• Update ftp links

  #37 opened 3 years ago by genomax
  1

• How download data for more than 500 sample

  #35 opened 3 years ago by Hemantcnaik
  2

• Search by GEO series ID does not seem to work

  #34 opened 3 years ago by rioualen
  2

• Aspera commands not being created correctly

  #33 opened 3 years ago by mblue9
  3

• bash script download broken

  #32 opened 4 years ago by sdx23
  4

• Update SRA downloads

  #15 opened 5 years ago by ewels
  2

• SRA explorer not generating Aspera FASTQ download scripts

  #31 opened 4 years ago by ASethiProjects
  4

• the sra download link do not work

  #14 opened 5 years ago by tianxiahuihui
  6

• Multiple SRA accession

  #30 opened 4 years ago by ZarulHanifah
  2

• ENA FastQ downloads give bad cURL command when paired end

  #28 opened 4 years ago by ewels
  0

• Aspera FastQ file link not appearing

  #24 opened 4 years ago by JonathonMifsud
  8

• SRA explorer problem

  #26 opened 4 years ago by mospinam1
  3

• SRA-explorer not retrieving results

  #25 opened 4 years ago by sivico26
  3

• can't acess GSEXXX

  #23 opened 4 years ago by HouyuZhang
  2

• sra-explorer can't find some links for download

  #22 opened 4 years ago by FerallOut
  2

• Accessions with SRA download but no fastq download

  #21 opened 5 years ago by vpeddu
  1

• GEO accession not working

  #20 opened 5 years ago by igordot
  4

• SRA Explorer not returning results

  #19 opened 5 years ago by tamuanand
  4

• additional metadata fields

  #11 opened 5 years ago by igordot
  3

• URLs/ commands for downloading FASTQ are not loading

  #18 opened 5 years ago by shahsam
  2

• Link up to AWS S3 buckets

  #17 opened 5 years ago by ewels
  1

• No response for GEO accession

  #16 opened 5 years ago by hmkim
  2

• Not all samples found

  #13 opened 5 years ago by olgabot
  4

• Stuck at Loading?

  #12 opened 5 years ago by cpgme
  3

• Quotes needed for wget command

  #9 opened 5 years ago by ewels
  4

• Options not working, and time-out

  #10 opened 5 years ago by FelixKrueger
  2

• Rate limit EBI access

  #8 opened 6 years ago by s-andrews
  0

• Get FastQ download links from the ENA

  #3 opened 6 years ago by ewels
  3

• Warn when no FastQ files available from ENA

  #7 opened 6 years ago by vang42
  5

• Doesn't recognise GSE77453

  #6 opened 6 years ago by s-andrews
  4

• Other easy ways for people to get data from SRA

  #5 opened 6 years ago by DCGenomics
  1

• SRA-explorer only retrieves the first out of many entries for an SRA sample

  #2 opened 6 years ago by FelixKrueger
  4

• compatibilty with bcbio

  #4 opened 6 years ago by lpantano
  3

• Enable batch result fetching for large numbers of results

  #1 opened 8 years ago by ChristelKrueger
  3