University of Colorado Department of Biomedical Informatics
University of Colorado, School of Medicine, Anschutz Medical Campus
Pinned Repositories
healthcare-data-harmonization
This is an engine that converts data of one structure to another, based on a configuration file which describes how. There is an accompanying syntax to make writing mappings easier and more robust.
mends-on-fhir
omop-fhir-data
redirects
redirects-website
Test out "chatroom" redirection link below:
reformed-k8s-demo
SET Office Hours Demo from 2022-08-17 on deploying Reformed to Kubernetes
set-notegraph
Software engineering team notes.
set-presentations
A repository for presentations from the DBMI Software Engineering Team (SET)
set-website
Website for the software engineering team (SET)
wall-of-software
A list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI
University of Colorado Department of Biomedical Informatics's Repositories
CU-DBMI/redirects
CU-DBMI/mends-on-fhir
CU-DBMI/set-notegraph
Software engineering team notes.
CU-DBMI/set-presentations
A repository for presentations from the DBMI Software Engineering Team (SET)
CU-DBMI/wall-of-software
A list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI
CU-DBMI/healthcare-data-harmonization
This is an engine that converts data of one structure to another, based on a configuration file which describes how. There is an accompanying syntax to make writing mappings easier and more robust.
CU-DBMI/omop-fhir-data
CU-DBMI/redirects-website
Test out "chatroom" redirection link below:
CU-DBMI/set-website
Website for the software engineering team (SET)
CU-DBMI/CCPM-IO.github
A special GitHub repository for setting the CCPM-IO organization profile and default community health files.
CU-DBMI/gc-cloud-storage-bucket
Template for creating Cloud Storage bucket on Google Cloud.
CU-DBMI/research-lifecycle-template
A template for conducting scientific exploration using the research lifecycle and version control.
CU-DBMI/rtx-kg2-gateway
Enabling RTX-KG2 data access through various means.
CU-DBMI/set-effort-analysis
Data analysis on DBMI Software Engineering Team efforts.
CU-DBMI/sqlite-clean
A SQLite data validation and cleanup tool.
CU-DBMI/action-pr-test-3
A test repo to see why workflows submitted from forked PRs weren't running, please ignore
CU-DBMI/dbmi_seminar
@cu-dbmi seminar committee material
CU-DBMI/dei-resources
An open source repository for shared Diversity, Equity, and Inclusion (DEI) educational resources.
CU-DBMI/demo-github-actions
This repository helps demonstrate various Github Actions capabilities.
CU-DBMI/demo-poetry-dynamic-semver-with-docker-hub-push
A demonstrational repository showing how Python Poetry dynamic versioning can be used to distribute Docker container images on Docker Hub for Python packages.
CU-DBMI/demo-python-memory-reference-accounting
Demonstrating Python memory allocator reference counting and debug.
CU-DBMI/example-hpc-alpine-python
Demonstrating the use of Python on Alpine, a High Performance Compute (HPC) cluster hosted by the University of Colorado Boulder's Research Computing.
CU-DBMI/notebooks
Demonstrational and shareable Jupyter notebooks deployed using JupyterLite on Github Pages.
CU-DBMI/pmc-crawler
Crawls PMC for publications by specified authors
CU-DBMI/r-and-python-env-experiments
Exploring R and Python environment management.
CU-DBMI/rootstock
TEST for Manubot AI Editor
CU-DBMI/RTX-KG2
Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
CU-DBMI/rxivist
API providing access to papers and authors scraped from biorxiv.org
CU-DBMI/set-intake
Request support from the Software Engineering Team
CU-DBMI/toggl-work-reports
Perform routine toggl work report generation or calculations