University of Colorado Department of Biomedical Informatics
University of Colorado, School of Medicine, Anschutz Medical Campus
Pinned Repositories
healthcare-data-harmonization
This is an engine that converts data of one structure to another, based on a configuration file which describes how. There is an accompanying syntax to make writing mappings easier and more robust.
mends-on-fhir
omop-fhir-data
redirects
redirects-website
Test out "chatroom" redirection link below:
reformed-k8s-demo
SET Office Hours Demo from 2022-08-17 on deploying Reformed to Kubernetes
set-notegraph
Software engineering team notes.
set-presentations
A repository for presentations from the DBMI Software Engineering Team (SET)
set-website
Website for the software engineering team (SET)
wall-of-software
A list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI
University of Colorado Department of Biomedical Informatics's Repositories
CU-DBMI/sqlite-clean
A SQLite data validation and cleanup tool.
CU-DBMI/reformed-k8s-demo
SET Office Hours Demo from 2022-08-17 on deploying Reformed to Kubernetes
CU-DBMI/mondaydotcom-notebooks
Center-specific notebook logic, mostly with MDC data
CU-DBMI/smartsheet-notebooks
Process and notebooks around Smartsheet
CU-DBMI/center-notebooks
Python Jupyter notebooks for pre-production or one-off experiments.
CU-DBMI/pycytominer-performance
Performance profiling to enhance and troubleshoot pycytominer
CU-DBMI/mondaydotcom-utils
A collection of Monday.com utilities, many specific to our use.
CU-DBMI/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
CU-DBMI/locust-k8s-loadtester
Distributed load testing using Kubernetes on Google Container Engine