CahanLab/singleCellNet

Issues

• Transcription factor

  #55 opened 5 months ago by bali-eng
  2

• vignette link leads to Page not found

  #54 opened 6 months ago by mengxiao-he
  0

• SCN score a probability?

  #53 opened 10 months ago by alvaannett
  0

• Forcing all cells to be assigned?

  #41 opened 3 years ago by igrabski
  1

• How to increase font size in sc_violinClass and other SCN plots?

  #44 opened a year ago by bijuissacch224610
  2

• SCN with sparse matrices

  #42 opened a year ago by jmaggiore
  1

• An error in scn_train: new columns would leave holes after existing columns

  #39 opened a year ago by 10myl200
  3

• Avoid classifier re-training

  #37 opened a year ago by a-solovyev12
  4

• warnings and error related to scn_train: "In sqrt(as.numeric(llfit$summary[, 2])) : NaNs produced"

  #50 opened a year ago by alexwang1001
  2

• class_info$cgenes_list clarification

  #45 opened a year ago by kguion1
  1

• dataset about viggette

  #51 opened a year ago by yuxiaokang-source
  1

• error in assign_cate

  #49 opened 2 years ago by roofya
  2

• Can't classify cells

  #47 opened 2 years ago by anemartinezlarrinaga2898
  2

• An extraordinary result with sc_compAlpha function

  #46 opened 2 years ago by zyb1984
  0

• Singlecellnet introduces "rand" as new cells in the prediction output

  #43 opened 3 years ago by matt-sd-watson
  2

• Different result of "Visualize average top pairs genes expression for training data"

  #38 opened 3 years ago by hyjforesight
  2

• hm_gpa_sel missing genes

  #40 opened 3 years ago by ccshao
  0

• how to create rda file for pbmc dataset from 10X?

  #36 opened 3 years ago by hyjforesight
  2

• error: package ‘ps’ does not have a namespace

  #35 opened 3 years ago by hyjforesight
  4

• clean the TM10X(stList_tm10x_full, sampTab) data into a structure as same as the example data

  #34 opened 4 years ago by lyuguol
  10

• Error in intI(i, n = x@Dim[1], dn[[1]], give.dn = FALSE) : invalid character indexing

  #32 opened 4 years ago by mr-september
  3

• extractSCE object "exp_type" not found

  #33 opened 4 years ago by ViolaChenYT
  1

• rand cluster

  #28 opened 4 years ago by bioguy2018
  6

• Elaboration on methods

  #31 opened 4 years ago by Firedrops
  3

• Reducing memory requirements

  #30 opened 4 years ago by concatenize
  2

• Ortholog Table for Cross-Species Comparisons

  #29 opened 4 years ago by mhwadsworth91
  4

• Other Training datasets and form of import dataset

  #27 opened 4 years ago by bioguy2018
  2

• Error in classMat

  #26 opened 4 years ago by juliaszusz
  2

• Vignette Error: differing number of rows

  #25 opened 4 years ago by juliaszusz
  5

• "rand" category

  #20 opened 5 years ago by DHGK
  5

• Error in combn: n < m

  #24 opened 5 years ago by ekernf01
  2

• Some singleCellNet error

  #23 opened 5 years ago by nanshanjin
  2

• somesingleCellNet

  #22 opened 5 years ago by nanshanjin
  1

• Issues in going through the provided data

  #21 opened 5 years ago by bencch
  2

• Cell type with less than 100 cells

  #19 opened 5 years ago by Pikachu233
  1

• query_transform function error

  #18 opened 5 years ago by DHGK
  4

• Issues for Installation

  #16 opened 5 years ago by DHGK
  2

• 'mc.cores' > 1 is not supported on Windows

  #17 opened 5 years ago by DHGK
  2

• Interoperability with AnnData or Loom

  #14 opened 6 years ago by cartal
  3

• theme_dviz_hgrid not defined

  #11 opened 6 years ago by pcahan1
  0

• require package umap

  #13 opened 6 years ago by pcahan1
  0

• weighted_down dThresh?

  #12 opened 6 years ago by pcahan1
  0

• functions not exported

  #10 opened 6 years ago by yuqiyuqitan
  2

• corplot_sub layer display selection

  #8 opened 6 years ago by yuqiyuqitan
  1

• cor_plot

  #7 opened 6 years ago by pcahan1
  0

• Easily heatmap top x genes across all clusters

  #3 opened 6 years ago by remyschwab
  0

• adapting gpa clustering to the exisiting classification pipeline

  #9 opened 7 years ago by yuqiyuqitan
  1

• add top enr genes to the side of the correlation heatmap

  #4 opened 7 years ago by remyschwab
  0

• Functions to add to singleCellNet Namespace

  #6 opened 7 years ago by remyschwab
  1

• Error in makeNode... object 'Node' not found

  #5 opened 7 years ago by remyschwab
  1