ChelseaCHENX

ChelseaCHENX's Stars

• nomic-ai/deepscatter

  Zoomable, animated scatterplots in the browser that scales over a billion points

  Language:TypeScript1.1k156162

• bowang-lab/scGPT

  Language:Jupyter Notebook1.1k34238207

• omnideconv/immunedeconv

  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

  Language:R4621393102

• hbctraining/Intro-to-ChIPseq

  Intro to ChIPseq using HPC

  Language:SCSS2891070154

• ryanlayer/giggle

  Interval data structure

  Language:C226205529

• HHS-AHRQ/MEPS

  This repository provides example code for loading and analyzing data from AHRQ's Medical Expenditure Panel Survey (MEPS). More information about the survey and access to public use data files is available on our website

  Language:SAS16928072

• YosefLab/VISION

  Signature Analysis and Visualization for Single-Cell RNA-seq

  Language:R16069132

• getzlab/rnaseqc

  Fast, efficient RNA-Seq metrics for quality control and process optimization

  Language:C++150117319

• RyanWangZf/PyTrial

  PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development

  Language:Python844617

• mdozmorov/Immuno_notes

  Immunology-related bioinformatics data and tools

  696034

• single-cell-genetics/cardelino

  Clone identification from single-cell data

  Language:R5971312

• PCAWG-11/Evolution

  Code accompanying The Evolutionary history of 2,658 cancers

  46408

• pachterlab/LP_2021

  Language:TeX45579

• jvfe/pytrials

  Python package that wraps around the ClinicalTrials.gov API

  Language:Python4341119

• Borda/kaggle_vol-3D-classify

  Predict the status of a genetic biomarker important for brain cancer treatment

  Language:Jupyter Notebook38204

• Nanostring-Biostats/GeomxTools

  Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.

  Language:R35912916

• broadinstitute/PANOPLY

  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)

  Language:R3362515

• MacoskoLab/slideseq-tools

  Tools for analyzing Slide-seq data

  Language:Python314108

• RyanWangZf/Trial2Vec

  Findings of EMNLP'22 | Trial2Vec: Zero-Shot Clinical Trial Document Similarity Search using Self-Supervision

  Language:Python19364

• DavisLaboratory/standR

  Spatial transcriptomics analyses and decoding in R

  Language:R183334

• KChen-lab/MEDALT

  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile

  Language:R172112

• ruggleslab/blackSheep

  Language:Python10404

• rstickels/Slide_seqv2

  notebooks for loading Slide-seqV2 data and some associated analyses

  Language:Jupyter Notebook9324

• epurdom/cancerTiming

  Language:R4213

• getzlab/rnaseqc2-paper

  RNA-SeQC 2 manuscript materials

  Language:Jupyter Notebook3802

• Crazy-Jack/e2database-release

  Language:JavaScript2201

• KHP-Informatics/GEOexplorer

  Language:R2101

• lukasfolle/CSAE

  Implementation of the CSAE model

  Language:Python2100

• x-atlas-consortia/ubkg-docs

  Unified Biomedical Knowledge Graph (UBKG) Documentation

  Language:JavaScript2431

• lukasfolle/MONAI

  AI Toolkit for Healthcare Imaging

  Language:Python1000