Issues
- 1
Poisson's pmf
#61 opened by hreypar - 1
add CUT&RUN details
#69 opened by mistrm82 - 1
How can I get the bam file
#63 opened by taoyongac - 1
- 1
How to get the bed file
#66 opened by luckysardar - 1
Visualization of peaks-about the bed file
#70 opened by wisRen - 1
macs2 bdgpeakcall only gives a few peaks
#71 opened by jiangshan529 - 0
Genrich to Diffbind
#68 opened by LunaPatton - 0
Update deeptools version
#64 opened by jihe-liu - 3
remove with IDR
#52 opened by mistrm82 - 0
DiffBind updates
#62 opened by mistrm82 - 2
Alignment theory lecture - small edit
#47 opened by marypiper - 1
- 0
add link for X11 into ChIPQC lesson
#57 opened by mistrm82 - 1
- 0
Create bai file for bams in automation lesson
#60 opened by marypiper - 1
update automation lesson for debugging
#51 opened by mistrm82 - 0
code should have full paths where possible
#56 opened by mistrm82 - 0
- 0
motif analysis and annotation in homer
#59 opened by mistrm82 - 1
trim the SAM file description in alignment
#48 opened by mistrm82 - 2
- 1
- 5
functional analysis change biomart to annotables
#26 opened by mistrm82 - 0
- 0
Update text for filtering following alignment
#55 opened by marypiper - 0
- 2
update sambamba filter to address duplicates
#49 opened by mistrm82 - 2
Change diagram for cross-correlation to move the top ranges to middle of peak
#30 opened by marypiper - 1
FileZilla screenshot in QC needs to be changed -
#35 opened by mistrm82 - 0
add in greylisting info
#45 opened by mistrm82 - 2
Change the main page README links (broken)
#39 opened by mistrm82 - 3
add narrow peak to file formats slide deck
#28 opened by mistrm82 - 1
- 3
Samtools and sambamba in QC lesson
#34 opened by mistrm82 - 1
- 0
Add in BWA
#43 opened by mistrm82 - 2
Adding details on alignment
#32 opened by mistrm82 - 3
find and replace ChIP-seq or ChIP-Seq
#29 opened by marypiper - 2
creating a lesson for automation
#21 opened by mistrm82 - 0
- 3
csaw lesson?
#40 opened by cjfields - 0
Explain the sort command in visualization lesson
#37 opened by mistrm82 - 0
Adding more detail on the SAM file
#33 opened by mistrm82 - 1
- 0
more concise project management section
#42 opened by mistrm82 - 1
Adding slides on Illumina sequencing— add the link to the YouTube Ilumina video in the markdown
#31 opened by mistrm82 - 1
move new BAM files over to groups directory
#22 opened by mistrm82 - 0
update chipQC subset report link
#23 opened by mistrm82 - 1
change the workflow images
#24 opened by mistrm82