Chris1221

Lead scientist at Deep Genomics interested in functional, statistical, and population genomics.

@deepgenomicsToronto

Pinned Repositories

aavcf
Swap allels to ancestral / derived in a VCF.
Language:C++2 3 00
genomic_interval_pipeline
Pre-processing of genomic intervals for deep learning.
Language:Rust0 3 10
goldi
R Package for Gene Ontology Label Discernment and Identification.
Language:R7 4 222
impute
Automated imputation pipeline for arbitrary dataset and reference panels.
Language:Shell7 4 83
pRs
Toolkit for the efficient construction and analysis of polygenic risk scores in R.
Language:R9 4 48
talks
:bar_chart: (old) Posters and Slides for talks given
Language:HTML2 4 00
yamldoc
Dependency-free YAML documentation engine.
Language:Python11 3 93
LanceOtron
Language:Python23 2 195
smcsmc
Demographic inference from whole genomes
Language:C++11 5 264
stdpopsim
A library of standard population genetic models
Language:Python126 14 69387

Chris1221's Repositories

Chris1221/yamldoc
Dependency-free YAML documentation engine.
Language:Python11 3 93
Chris1221/epic_rpg_converter
A Discord bot for converting between resources in Epic RPG (another Discord bot).
Language:Python1 4 1
Chris1221/ggsource
Easily open the file used to generate an exported PDF from R / ggplot2.
Language:R1 3 0
Chris1221/IMa3_Input
A Snakemake pipeline for creating IMa3 input from a VCF file via the Popgen Pipeline Platform.
Language:Python1 3 0
Chris1221/lanceotron
Command-line interface to the LanceOTron deep learning peak caller
Language:Python1 3 3
Chris1221/genomic_interval_pipeline
Pre-processing of genomic intervals for deep learning.
Language:Rust0 3 10
Chris1221/advent_of_code_2022
Solutions for the advent of code 2022
Language:Python2 0
Chris1221/advent_of_code_2023
Solutions for the advent of code 2023
Language:Rust2 0
Chris1221/allerID
A goldi-based shiny app to identify allergens.
Language:R3 0
Chris1221/blda
Weighted latent dirichlet allocation for bulk ATAC-seq
Language:Python3 1
Chris1221/Chris1221
3 0
Chris1221/chris1221.github.io
Personal website.
Language:HTML3 0
Chris1221/cisTopic
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
Language:R2 0
Chris1221/cookbook
Flask cookbook application automatically deployed to Github pages
Language:HTML3 0
Chris1221/crafting_interpreters
Working through Robert Nystrom's Crafting Interpreters
Language:C3 0
Chris1221/deepStab
Deep learning prediction of cell-type specific RNA stability.
Language:Python3 0
Chris1221/dphil_thesis
DPhil thesis completed at the University of Oxford
Language:TeX3 0
Chris1221/fusion_twas
methods for functional summary-based imputation
Chris1221/ldsc
LD Score Regression (LDSC)
Language:Python1 0
Chris1221/minimal_snakemake_report
An example of snakemake's reporting functionality.
Language:HTML2 0
Chris1221/particles
Language:Python
Chris1221/polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
Language:Python1 0
Chris1221/regenie
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
Language:C++2 0
Chris1221/SCOPE
Scalable population structure inference
Language:C++1 0
Chris1221/smcsmc
Demographic inference from whole genomes
Chris1221/stdpopsim
A library of standard simulation models for msprime
Language:Python2 0
Chris1221/tll
A tiny little language
Language:Python2 0
Chris1221/undergraduate_thesis
Optimal polygenic prediction for coronary artery disease
Language:TeX
Chris1221/wdlfmt
Pure python ANTLR4-based formatter for WDL v1.0
Language:Python1 8
Chris1221/wgba
Which genome build again?
Language:Python3 0