DKFZ-ODCF/AlignmentAndQCWorkflows

WGBS Bug: coveragePlot.R

Opened this issue · 1 comments

Bug in R-Script coveragePlot.R, finishes with error:

Error in axis(1, at = pretty(c(0, nrow(sampleOneCon[[i]]))), labels = paste(pretty(c(0,  :
  'at' and 'labels' lengths differ, 8 != 5
Execution halted

M. Schlesner: @sjkv mentioned that the plotting script fails with too many open devices. One reason for this might be that it is run on all contigs in the genome, including the unplaced regions, decoy sequences, ...
It is important that the genome coverage plot script runs only on 1-22, X, Y.