DKFZ-ODCF/AlignmentAndQCWorkflows

Tagmentation WGS and WES

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vinjana commented

Tagmentation WGS and WES data come up and need to be processed in a way similar to the T-WGBS data, namely by first doing duplication marking per library followed by simple merging of library-BAMs.

The following steps need to be taken:

  • allow specification of metadata table also for WES and WGS data (#19)
  • adapt the WGBS merge-job code for WGS and WES