DanNBullock
@AAAS STPF fellow at @nsf-open, Office of Advanced Cyberinfrastructure (OAC) | Mostly python, long variable names, & more comments than code.
NSFAlexandria, VA
Pinned Repositories
app-wmaSeg
Classifies streamlines into known anatomical tracts.
accSeg
An anatomically defined, subject specific tractography segmention of connections to the human anterior cingulate cortex via dockerized processing steps.
app-track_aLIC
Containerized app for tracking the anterior limb of the internal capsule (in humans)
app-voxeleronOCT
This app computes the mean and standard deviation of Voxeleron OTC data for each degree of visual angle. This can be computed within a single layer, or across layers. The output of this app is a table for both mean and standard deviation, and the output data (visual angle OCT data) for each combination of eye and layer combination.
citeas-on-requirements
GitHub action for using the CiteAs API to generate a software citation ACKNOWLEDGEMENTS.md document from requirements.txt
OCT_scripts
Documented matlab code for processing Voxeleron OCT data and MAIA data
USG_grants_crawl
An exploration of federal (and some non-federal) grant programs and awards relating to Open Science and Open Science Infrastructure, using data from grants.gov, NIH, NSF, DOE. Implemented in python & jupyter notebooks.
WiMSE
A collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.
wma_tools
A set of tools useful for the segmentation and analysis of streamline tractography. Makes use of several vistasoft (https://github.com/vistalab/vistasoft) functions.
dspg20oss
Repository for the 2020 Data Science for the Public Good Open-Source Software Project
DanNBullock's Repositories
DanNBullock/OCT_scripts
Documented matlab code for processing Voxeleron OCT data and MAIA data
DanNBullock/USG_grants_crawl
An exploration of federal (and some non-federal) grant programs and awards relating to Open Science and Open Science Infrastructure, using data from grants.gov, NIH, NSF, DOE. Implemented in python & jupyter notebooks.
DanNBullock/accSeg
An anatomically defined, subject specific tractography segmention of connections to the human anterior cingulate cortex via dockerized processing steps.
DanNBullock/app-track_aLIC
Containerized app for tracking the anterior limb of the internal capsule (in humans)
DanNBullock/citeas-on-requirements
GitHub action for using the CiteAs API to generate a software citation ACKNOWLEDGEMENTS.md document from requirements.txt
DanNBullock/DanNBullock.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
DanNBullock/wma_pyTools
refactoring of wma_tools into python
DanNBullock/2024-open-source-standards-report
DanNBullock/2024-open-source-standards-workshop
The website for the workshop "An Open Source Model for Data/Metadata Standards", April 8-9, 2024
DanNBullock/app-createMNI_ROIS_and_warp2subj
DanNBullock/app-de-island_parcellation
Remove islands (unconnected components) from and/or inflate a given volumetric parcellation.
DanNBullock/app-DIPY-connectome_and_WMC_from_parc
Generate a structural connectivity matrix and a White Matter Classification structure for a given parcellation and tractogram.
DanNBullock/app-filterViaQuickbundles
DanNBullock/app-NHP_HCP_preproc
DanNBullock/app-ProbtrackX_connectome
DanNBullock/app-ProbtrackX_connectome-nipype
DanNBullock/app-segment_with_ROIs
DanNBullock/app-SNR_Report
DanNBullock/app-tcks_to_tck_and_WMC
Simple converter for the multi-tck format, tcks, which combines these into a single tck file and produces an associated WMC file.
DanNBullock/app-template-python
This is a template for a python-based brainlife.io/app
DanNBullock/app-warp_refROI_to_subjSpace
A generic template app for warping a provided ROI (situated in a reference space) to a given subject space.
DanNBullock/app-wma_pyTools-TractFigs
An app for generating multiple different kinds of figures from an input set of tracts (e.g as represented by a WMC object)
DanNBullock/Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
DanNBullock/autoCFF
DanNBullock/macapype
PNH segmentation pipelines based on nipype
DanNBullock/NHPPipelines
Enhancements of HCP Pipelines for non-human primates
DanNBullock/ontogpt-grants
GPT-based ontological extraction tools, including SPIRES, for assessing or categorizing Open-Science aspects of grants
DanNBullock/projectTemplate
A template repository, with templated integration of hooks and actions
DanNBullock/pysurferPlotting
Code for using pysurfer to plot
DanNBullock/quickText_N-gram