DanNBullock

@AAAS STPF fellow at @nsf-open, Office of Advanced Cyberinfrastructure (OAC) | Mostly python, long variable names, & more comments than code.

NSFAlexandria, VA

Pinned Repositories

app-wmaSeg
Classifies streamlines into known anatomical tracts.
Language:MATLAB1 12 135
accSeg
An anatomically defined, subject specific tractography segmention of connections to the human anterior cingulate cortex via dockerized processing steps.
Language:Shell1 2 11
app-track_aLIC
Containerized app for tracking the anterior limb of the internal capsule (in humans)
Language:Shell1 2 32
app-voxeleronOCT
This app computes the mean and standard deviation of Voxeleron OTC data for each degree of visual angle. This can be computed within a single layer, or across layers. The output of this app is a table for both mean and standard deviation, and the output data (visual angle OCT data) for each combination of eye and layer combination.
Language:MATLAB1 3 31
citeas-on-requirements
GitHub action for using the CiteAs API to generate a software citation ACKNOWLEDGEMENTS.md document from requirements.txt
Language:Python1 2 110
OCT_scripts
Documented matlab code for processing Voxeleron OCT data and MAIA data
Language:MATLAB2 4 203
USG_grants_crawl
An exploration of federal (and some non-federal) grant programs and awards relating to Open Science and Open Science Infrastructure, using data from grants.gov, NIH, NSF, DOE. Implemented in python & jupyter notebooks.
Language:HTML2 1 61
WiMSE
A collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.
Language:Jupyter Notebook6 3 46
wma_tools
A set of tools useful for the segmentation and analysis of streamline tractography. Makes use of several vistasoft (https://github.com/vistalab/vistasoft) functions.
Language:MATLAB3 3 255
dspg20oss
Repository for the 2020 Data Science for the Public Good Open-Source Software Project
Language:Jupyter Notebook0 5 02

DanNBullock's Repositories

DanNBullock/WiMSE
A collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.
Language:Jupyter Notebook6 3 46
DanNBullock/wma_tools
A set of tools useful for the segmentation and analysis of streamline tractography. Makes use of several vistasoft (https://github.com/vistalab/vistasoft) functions.
Language:MATLAB3 3 255
DanNBullock/app-voxeleronOCT
This app computes the mean and standard deviation of Voxeleron OTC data for each degree of visual angle. This can be computed within a single layer, or across layers. The output of this app is a table for both mean and standard deviation, and the output data (visual angle OCT data) for each combination of eye and layer combination.
Language:MATLAB1 3 31
DanNBullock/mba
Matlab Brain Anatomy. This is a set of routines for displaying and manipulating brain anatomy using MatLab.
Language:MATLAB1 2 00
DanNBullock/NeuroAnatParse
Language:Python1 1 00
DanNBullock/2019_projects
Directory of Neurohackademy 2019 projects
1 0
DanNBullock/app-dipy-workflows
Brainlife wrapper app for Dipy workflows.
Language:Shell1 0
DanNBullock/app-hcp-pipeline
brainlife wrapper for HCP Pipelines
Language:Python1 0
DanNBullock/app-mrtrix3-act
Runs mrtrix3 ACT (Anatomically Constrained Tractography) using either single- or multi-shell diffusion-weighted MRI data.
Language:Shell1 0
DanNBullock/app-qsiprep
Preprocessing of diffusion MRI data.
Language:Python1 0
DanNBullock/atlaskit
Tools for working with brain atlas labels
Language:Python1 0
DanNBullock/atlasTractSegment
2021 Bloomington hackathon working repo for prototype WM atlas tract segmentation method
Language:Python1
DanNBullock/CsvTractStatPlot
Language:MATLAB2 0
DanNBullock/decker
Decker game, from 2001, remade in Javascript
Language:JavaScript0 0
DanNBullock/dipy
Diffusion MR Imaging in Python
Language:Python2 0
DanNBullock/docker-atlaskit
atlaskit dockerfile
Language:Dockerfile1 0
DanNBullock/EcogAnalysisCode
White matter overlap with EEG sites analysis code for Babo-Rebelo et al. 2021
Language:MATLAB3 21
DanNBullock/emdPermutePlotting
Language:Python2 0
DanNBullock/homologyTranslation
Language:Jupyter Notebook2 0
DanNBullock/interactiveWMSegmentation
A user-friendly jupyter notebook for performing anatomy-based segmentations.
Language:Jupyter Notebook
DanNBullock/NHP-Freesurfer
Procedure to create monkey brain surfaces and project results to it
Language:Jupyter Notebook1 0
DanNBullock/papers
A repository for my cool paper
1 0
DanNBullock/pyCircos
python Circos
Language:Jupyter Notebook
DanNBullock/socialNeuro
code related to Fall 2020 Social Neuro
Language:Jupyter Notebook
DanNBullock/testProject
Language:R
DanNBullock/validator-neuro-microperimetry
microperimetry datatype validator
Language:Python1 0
DanNBullock/validator-neuro-wmc
Language:Python1 0
DanNBullock/validator-optometry-oct
brainlife validator for optometry-oct
Language:Python1 0
DanNBullock/vistasoft
VISTASOFT is the main software repository of the VISTA lab at Stanford University.
Language:MATLAB2 0
DanNBullock/WMAD
An interactive database and framework for cataloging accounts of white matter tracts and their anatomy throughout the literature
Language:Jupyter Notebook