Dessimoz Lab

Lausanne and London

Pinned Repositories

edgehog
Infering ancestral synteny with hierarchical orthologous groups
Language:Python11 6 00
FastOMA
FastOMA is a scalable software package to infer orthology relationship.
Language:Python27 3 117
fold_tree
snakemake pipeline for creating trees from sequence sets
Language:Jupyter Notebook69 11 205
HogProf
Phylogenetic profiling with orthology data
Language:Jupyter Notebook9 7 12
matreex
Language:HTML16 9 02
omamer
OMAmer - tree-driven and alignment-free protein assignment to sub-families
Language:Python15 8 95
OMArk
Language:Python56 6 196
phylo-io
Phylo.IO JS tree viewer
Language:JavaScript28 9 910
pyham
Language:Python9 6 205
read2tree
a tool for inferring species tree from sequencing reads
Language:Python142 11 6218

Dessimoz Lab's Repositories

DessimozLab/read2tree
a tool for inferring species tree from sequencing reads
Language:Python142 11 6218
DessimozLab/fold_tree
snakemake pipeline for creating trees from sequence sets
Language:Jupyter Notebook69 11 205
DessimozLab/OMArk
Language:Python56 6 196
DessimozLab/phylo-io
Phylo.IO JS tree viewer
Language:JavaScript28 9 910
DessimozLab/FastOMA
FastOMA is a scalable software package to infer orthology relationship.
Language:Python27 3 117
DessimozLab/matreex
Language:HTML16 9 02
DessimozLab/omamer
OMAmer - tree-driven and alignment-free protein assignment to sub-families
Language:Python15 8 95
DessimozLab/edgehog
Infering ancestral synteny with hierarchical orthologous groups
Language:Python11 6 00
DessimozLab/HogProf
Phylogenetic profiling with orthology data
Language:Jupyter Notebook9 7 12
DessimozLab/pyham
Language:Python9 6 205
DessimozLab/pyopa
A fast implementation of optimal pairwise alignments with python
Language:C7 5 11
DessimozLab/omamo
OMAMO: orthology-based model organism selection
Language:Python5 8 13
DessimozLab/FastOMA_temp
Language:Python3
DessimozLab/OmaStandalone
OMA standalone repository
Language:Python3 6 142
DessimozLab/Archaeal-Fusexins
Discovery of archaeal Fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
Language:Jupyter Notebook2 8 00
DessimozLab/OmaDB
Language:Jupyter Notebook2 6 13
DessimozLab/pyomadb
PyOMADB is a python client to the OMA browser, using the REST API.
Language:Python2 4 41
DessimozLab/SIBBiodiversityBioinformatics2023
2 3 03
DessimozLab/f1000_PhylogeneticTree
A tutorial on using OMA Browser and OMA Standalone for phylogenetic species trees reconstruction. Scripts referred to in the tutorial paper can be found here.
Language:Python1 5 40
DessimozLab/nf-oma-browser-build
Nextflow pipeline to convert OMA to OMA browser
Language:Nextflow1
DessimozLab/pyoma
Python library to interact with OMA hdf5 files
Language:Python1 6 0
DessimozLab/f1000_profiling
a short tutorial on using OMA orthology and HOG data to characterize a conserved pathway
Language:Jupyter Notebook0 3 00
DessimozLab/gethogs
A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs
Language:Python0 6 00
DessimozLab/RDF_Graphnet
Language:Jupyter Notebook0 6 00
DessimozLab/CoronaCoev
coronavirus coevolution analysis
Language:Jupyter Notebook6 0
DessimozLab/django-matomo-api-tracking
Django Matomo app allowing server side traffic tracking
Language:Python1
DessimozLab/omataxonomy
taxonomy
Language:Python
DessimozLab/pyomabrowser
Django based webserver for omabrowser
Language:JavaScript
DessimozLab/SIBBiodiversityBioinformatics2024
Language:HTML
DessimozLab/yeast_fusion_segmenter
retrain yolov8 to segment and label yeast cells with interupted fusion phenotypes
Language:Jupyter Notebook