DessimozLab/pyham

Issues

• How to draw a singleton？

  #27 opened 6 months ago by billzhanghantao
  1

• internal node naming bug

  #26 opened 10 months ago by max-baer
  1

• Can't create pyham.Ham() object

  #25 opened 10 months ago by max-baer
  1

• ensembl tree

  #24 opened a year ago by rresendepinto
  1

• AttributeError: 'NoneType' object has no attribute 'features'

  #19 opened 3 years ago by gmartinezredondo
  4

• How to get all HOGs for a group of species?

  #4 opened 2 years ago by olgabot
  0

• pyham.Ham throws error with OMA species tree and HOGs

  #15 opened 2 years ago by Thyra
  4

• Some questions when following the tutorial of pyham

  #23 opened 2 years ago by zmz1988
  5

• orthofinder compatibility to pyham

  #22 opened 2 years ago by eli1199
  0

• Tutorial link not available

  #21 opened 2 years ago by alouis72
  2

• Extract genes from specific nodes

  #20 opened 3 years ago by eli1199
  12

• How to get a tree for current OMA release?

  #5 opened 3 years ago by olgabot
  11

• (Error in treeprofile) KeyError: '2 node(s) founded for the ancestral genome

  #14 opened 3 years ago by maiumy
  2

• More species in the species tree than in the orthoXML file

  #17 opened 3 years ago by gmartinezredondo
  4

• Taxonomy read function broken in OMA Browser REST API

  #9 opened 3 years ago by ethanbass
  3

• Empty Ham object?

  #16 opened 3 years ago by gmartinezredondo
  2

• TypeError: expect subclass obj of 'AncestralGenome', got ExtantGenome

  #7 opened 4 years ago by ethanbass
  3

• Treeprofile displaying help but no tree

  #6 opened 4 years ago by ak-watson
  3

• wrong tree loaded for oma-server based ham anlaysis

  #2 opened 5 years ago by alpae
  0

• Way to filter out minor splicing variants

  #1 opened 5 years ago by alpae
  1