/NLP_NER_BILSTM_CRF_Named_Entity_Recognition

NLP Named Entity Recognition dalam bidang Biomedis, mendeteksi teks dan membuat klasifikasi apakah teks tersebut mempunyai entitas plant atau disease, memberi label pada teks, menguji hubungan entitas plant dan disease, menilai kecocokan antara kedua entitas, membandingkan hasil uji dengan menggunakan models BILSTM-CRF

Primary LanguageJupyter Notebook

NLP

Named Entity Recognition (NER) - BILSTM - CRF

Slamet Riyanto S.Kom., M.M.S.I.

Dimas Dwi Putra

Architecture

Dataset
View Dataset .csv

Sentence # Word POS Tag
Sentence: 0 studies NNS O
Sentence: 0 on IN O
Sentence: 0 magnesium NN O
Sentence: 0 s NN O
Sentence: 0 mechanism NN O
Sentence: 0 of IN O
Sentence: 0 action NN O
Sentence: 0 in IN O
Sentence: 0 digitalis NN B-plant
Sentence: 0 induced VBD O
Sentence: 0 arrhythmias NNS B-disease
...

Eval
View Eval Report .xlsx

Entities precision recall f1-score support excecution time processor ram model batch size epochs embedding Length Uji
PAD 1,000000 1,000000 1,000000 131 4.49.57 cpu high 2 16 40 128 3000 7
Disease 0,774775 0,623188 0,690763 140
Plant 0,892857 0,892857 0,892857 135
micro avg 0,895288 0,836186 0,864728 406
macro avg 0,889211 0,838682 0,861207 406
weighted avg 0,887332 0,836186 0,858986 406
F-1 Scores 86,5%

Predict

Word           ||True ||Pred
==============================
the            : O     O
mutagen        : O     O
sensitivity    : O     O
assay          : O     O
msa            : O     O
a              : O     O
phenotypic     : O     O
marker         : O     O
of             : O     O
dna            : O     O
damage         : O     O
response       : O     O
and            : O     O
repair         : O     O
capacity       : O     O
has            : O     O
been           : O     O
consistently   : O     O
shown          : O     O
to             : O     O
associate      : O     O
with           : O     O
risk           : O     O
tobacco        : plant plant
related        : O     O
cancers        : disease disease

Output
View Model Directory

Save model output as .hdf5

Other Content

Websites Prediction

1. Django Websites Prediction For NER dan RE

Named Entity Recognition (NER)

1. NER Dataset Biomedical Plant-Disease Corpus

2. NER CRF Named Entity Recognition

3. NER BiLSTM Named Entity Recognition

4. NER BERT Named Entity Recognition

5. NER BiLSTM CRF Named Entity Recognition

6. NER BERT BiLSTM CRF Named Entity Recognition

Relation Extraction (RE)

1. RE Dataset Biomedical Plant-Disease Corpus

2. RE BERT Relation Extraction Biomedical

3. RE BiLSTM CRF Relation Extraction Biomedical