/NLP_NER_Dataset_Biomedical_Plant-Disease_Corpus

Biomedical Plant Disease Gold Standard Corpus Dataset For Named Entity Recognition From NCBI

Primary LanguageJupyter Notebook

NER Plant-Disease Dataset

Slamet Riyanto S.Kom., M.M.S.I.

Dimas Dwi Putra

Original

National Center for Biotechnology Information

Annotated

"Studies on magnesium's mechanism of action in <ENAMEX TYPE="plant">digitalis</ENAMEX> -induced <ENAMEX TYPE="disease">arrhythmias</ENAMEX> ."

B-I-O

studies	O
on	O
magnesium s	O
mechanism	O
of	O
action	O
in	O
digitalis	B-plant
induced	O
arrhythmias	B-disease

Json

{
  "id": 447, 
  "text": "studies on magnesium s mechanism of action in digitalis induced arrhythmias", 
  "labels": [
    ["T0", "plant", 46, 55, "digitalis"], 
    ["T1", "disease", 64, 75, "arrhythmias"]
  ]
}

Excel / CSV + NLTK POS Tagging

Sentence # Word POS Tag
Sentence: 0 studies NNS O
Sentence: 0 on IN O
Sentence: 0 magnesium NN O
Sentence: 0 s NN O
Sentence: 0 mechanism NN O
Sentence: 0 of IN O
Sentence: 0 action NN O
Sentence: 0 in IN O
Sentence: 0 digitalis NN B-plant
Sentence: 0 induced VBD O
Sentence: 0 arrhythmias NNS B-disease

Other Content

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Named Entity Recognition (NER)

1. NER Dataset Biomedical Plant-Disease Corpus

2. NER CRF Named Entity Recognition

3. NER BiLSTM Named Entity Recognition

4. NER BERT Named Entity Recognition

5. NER BiLSTM CRF Named Entity Recognition

6. NER BERT BiLSTM CRF Named Entity Recognition

Relation Extraction (RE)

1. RE Dataset Biomedical Plant-Disease Corpus

2. RE BERT Relation Extraction Biomedical

3. RE BiLSTM CRF Relation Extraction Biomedical