DingWB

DingWB's Stars

• DmitryUlyanov/Multicore-TSNE

  Parallel t-SNE implementation with Python and Torch wrappers.

  Language:C++1.9k4263229

• mdozmorov/HiC_tools

  A collection of tools for Hi-C data analysis

  546356123

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++493321k59

• aidenlab/juicer

  A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

  Language:Shell41217311181

• aidenlab/Juicebox

  Visualization and analysis software for Hi-C data -

  Language:Java2412382458

• broadinstitute/warp

  WDL Analysis Research Pipelines

  Language:WDL200256994

• aertslab/scenicplus

  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

  Language:Jupyter Notebook1781031128

• Marsilea-viz/marsilea

  Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

  Language:Python1632386

• saezlab/decoupler-py

  Python package to perform enrichment analysis from omics data.

  Language:Python157712623

• open2c/cooltools

  The tools for your .cool's

  Language:Jupyter Notebook1351330650

• davisidarta/topometry

  Systematically learn and evaluate manifolds from high-dimensional data

  Language:Python934134

• ma-compbio/Higashi

  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph

  Language:Jupyter Notebook7865610

• mdozmorov/scHiC_notes

  Notes on single-cell Hi-C technologies, tools, and data

  71219

• TACC/remora

  REMORA: REsource MOnitoring for Remote Applications

  Language:Shell58114818

• higlass/higlass-python

  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

  Language:Python5265812

• aertslab/create_cisTarget_databases

  Create cisTarget databases

  Language:Python409528

• HuMingLab/SnapHiC

  SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data

  Language:Python3541211

• paulsengroup/hictk

  Blazing fast toolkit to work with .hic and .cool files

  Language:C++232371

• AllenInstitute/cell_type_mapper

  Repository for storing prototype functionality implementations for the BKP

  Language:Python175104

• ma-compbio/Fast-Higashi

  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition

  Language:Jupyter Notebook17475

• BoomStarcuc/GeneSegNet

  Language:Python14252

• yoyoong/mHapSuite

  Language:Java11131

• CCCKW/mHapTk

  Language:Python9031

• aidenlab/hic-format

  3900

• AllenInstitute/bmark

  Pilot for single cell benchmarking datasets

  Language:Jupyter Notebook3601

• AllenInstitute/transcriptomic_clustering

  improved clustering pipeline for transcriptomic data

  Language:Python39550

• brain-bican/models

  BICAN data models

  Language:Python33

• jksr/morefish

  Language:Python2101

• AllenInstitute/scrattch.taxonomy

  Allen Institute Taxonomy building R package

  Language:HTML1571

• balansky/Tsne

  T-Distributed Stochastic Neighbor Embedding Library

  Language:C++1200