DininduSenanayake
Research Support Specialist in High Performance Computing (Bioinformatics/Computational Biology)
New Zealand eScience Infrastructure Auckland, New Zealand
Pinned Repositories
10x-templates
A collection of scripts and notes related to genomics and bioinformatics
20210322-intro-hpc-life-scientists
Repo for Introduction to HPC for Life Scientists course ran on 22/03/2021-24/03/2021
2022-obss-day3
acrfinder
AcrFinder, a tool for automated identification of Acr-Aca loci
alphafold
Open source code for AlphaFold.
assemblyStats
Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)
AutoHiC
A novel genome assembly pipeline based on deep learning
BioInfTUI
Repository to supplement the medium article about TUI usage in bioinformatics
easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
ga4gh_NeSI
DininduSenanayake's Repositories
DininduSenanayake/ga4gh_NeSI
DininduSenanayake/10x-templates
A collection of scripts and notes related to genomics and bioinformatics
DininduSenanayake/alphafold
Open source code for AlphaFold.
DininduSenanayake/assemblyStats
Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)
DininduSenanayake/BioInfTUI
Repository to supplement the medium article about TUI usage in bioinformatics
DininduSenanayake/Chapel_lessons
Lessons on Chapel Programming Language
DininduSenanayake/easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
DininduSenanayake/Julia_lessons
Lessons on Julia Programming Language
DininduSenanayake/ClusterPerf_tools
Usage of tools on Parallel Performance Analysis
DininduSenanayake/donut_c
DininduSenanayake/edna_workshop_june2021
https://otagoedna.github.io/edna_workshop_june2021/
DininduSenanayake/feat
A feature engineering automation tool for learning data representations
DininduSenanayake/gdcnotes
DininduSenanayake/Gene_Regulatory_Networks_Simulation_Workshop
DininduSenanayake/HCP_download
Script to download data from the Human Connectome Project, HCP-1200 subjects release.
DininduSenanayake/julia-mkl-amd
Intel MKL vs OpenBLAS on AMD HPC CPUs in Julia
DininduSenanayake/JuliaAtScale
DininduSenanayake/jupyterlab-slurm
DininduSenanayake/Long_read_genome_assembly
This is a compilation of the scripts I used for genome assembly using long read sequencing data
DininduSenanayake/MaSuRCA_on_NeSI_clusters
MaSuRCA-slurm integration on Mauika+MahuikaEX
DininduSenanayake/POLE-Endometrial-Sequencing-Project
DininduSenanayake/res-create
:necktie: :briefcase: Build fast :rocket: and easy multiple beautiful resumes and create your best CV ever! Made with Vue and LESS.
DininduSenanayake/RIOPA.jl
Proxy app for input/output pattern generation in the Exascale Computing Project using Julia
DininduSenanayake/RNA-seq-workshop
DininduSenanayake/Scaff10X
Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
DininduSenanayake/sismonr
sismonr - Simulation of In Silico Multi-Omic Networks R package
DininduSenanayake/snakemake_workshop
Snakemake workshop
DininduSenanayake/Workshop-Bash_Scripting_And_HPC_Job_Scheduler
A workshop to get you started with automating your data analysis work in a High Performance Computing environment
DininduSenanayake/wrangling-genomics
Data Wrangling and Processing for Genomics
DininduSenanayake/XSBench
XSBench: The Monte Carlo Macroscopic Cross Section Lookup Benchmark