DininduSenanayake
Research Support Specialist in High Performance Computing (Bioinformatics/Computational Biology)
New Zealand eScience Infrastructure Auckland, New Zealand
Pinned Repositories
10x-templates
A collection of scripts and notes related to genomics and bioinformatics
20210322-intro-hpc-life-scientists
Repo for Introduction to HPC for Life Scientists course ran on 22/03/2021-24/03/2021
2022-obss-day3
acrfinder
AcrFinder, a tool for automated identification of Acr-Aca loci
alphafold
Open source code for AlphaFold.
assemblyStats
Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)
AutoHiC
A novel genome assembly pipeline based on deep learning
BioInfTUI
Repository to supplement the medium article about TUI usage in bioinformatics
easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
ga4gh_NeSI
DininduSenanayake's Repositories
DininduSenanayake/2022-obss-day3
DininduSenanayake/acrfinder
AcrFinder, a tool for automated identification of Acr-Aca loci
DininduSenanayake/AutoHiC
A novel genome assembly pipeline based on deep learning
DininduSenanayake/BIOSCI701-NeSI_Jupyter_Login
Login and troubleshooting instructions for NeSI Jupyter Services.
DininduSenanayake/cit-hpc-easybuild
EasyBuild files, which are used on our local facilities
DininduSenanayake/dokdo
A Python package for microbiome sequencing analysis with QIIME 2
DininduSenanayake/drep
Rapid comparison and dereplication of genomes
DininduSenanayake/feat
A feature engineering automation tool for learning data representations
DininduSenanayake/ga-mkdocs-template
mkdocs test repository
DininduSenanayake/ganesi_authesetup-login
instructions : setting up authentiation factor and login to Mahuika jupyter
DininduSenanayake/herro
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14, Ultra-long (UL) reads.
DininduSenanayake/hpc-intro-dl
Introduction to running deep learning code on NeSI
DininduSenanayake/iab2
An Introduction to Applied Bioinformatics, 2nd Edition
DininduSenanayake/jloh
A tool to extract LOH blocks from VCF, BAM and FASTA data
DininduSenanayake/julia-on-hpc-systems
Information on how to set up Julia on HPC systems
DininduSenanayake/JuliaAtScale
DininduSenanayake/locator
deep learning prediction of geographic location from individual genome sequences
DininduSenanayake/mcclintock
Meta-pipeline to identify transposable element insertions using next generation sequencing data
DininduSenanayake/MetaBarFlow
Workflow for processing NGS data from metabarcoding experiments
DininduSenanayake/METABOLIC
A scalable high-throughput metabolic and biogeochemical functional trait profiler
DininduSenanayake/ModDotPlot
DininduSenanayake/nesi-cesm-config
DininduSenanayake/nesi_introductory_custom
DininduSenanayake/singlem
De-novo OTUs from shotgun metagenomes
DininduSenanayake/singularity-mpi-onMahuikaCluster
singularity-mpi-onMahuikaCluster
DininduSenanayake/TourOfJulia.jl
A tour of the Julia programming language
DininduSenanayake/training-environment
DininduSenanayake/vimrc
The ultimate Vim configuration (vimrc)
DininduSenanayake/wf-human-variation
DininduSenanayake/wf-human-variation_split
wf-human-variation_split