DininduSenanayake
Research Support Specialist in High Performance Computing (Bioinformatics/Computational Biology)
New Zealand eScience Infrastructure Auckland, New Zealand
Pinned Repositories
10x-templates
A collection of scripts and notes related to genomics and bioinformatics
20210322-intro-hpc-life-scientists
Repo for Introduction to HPC for Life Scientists course ran on 22/03/2021-24/03/2021
2022-obss-day3
acrfinder
AcrFinder, a tool for automated identification of Acr-Aca loci
alphafold
Open source code for AlphaFold.
assemblyStats
Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)
AutoHiC
A novel genome assembly pipeline based on deep learning
BioInfTUI
Repository to supplement the medium article about TUI usage in bioinformatics
easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
ga4gh_NeSI
DininduSenanayake's Repositories
DininduSenanayake/20210322-intro-hpc-life-scientists
Repo for Introduction to HPC for Life Scientists course ran on 22/03/2021-24/03/2021
DininduSenanayake/cloud-genomics
Cloud Genomics lesson
DininduSenanayake/DD2358
Tutorial materials for DD2358
DininduSenanayake/fortran-introduction
Introduction to Fortran Programming
DininduSenanayake/ga4gh-example-data
DininduSenanayake/github-markdown-toc
Easy TOC creation for GitHub README.md
DininduSenanayake/Hi-C-workshop
DininduSenanayake/Imputation-workshop
DininduSenanayake/MashMap
A fast approximate aligner for long DNA sequences
DininduSenanayake/metagenomics_summer_school
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December
DininduSenanayake/modlist
Page showing NeSI loaded applications.
DininduSenanayake/NeSI-Mahuika_slurm_profiling
Python script to generate the profile figures associated with Mahuika native slurm profiling
DininduSenanayake/nzrse-containers
Tutorial of containers-on-HPC with Singularity
DininduSenanayake/Rosalind
Solutions to Rosalind Bioinformatics Problems
DininduSenanayake/rosalind_chapel
Rosalind exercises in chapel
DininduSenanayake/shell-genomics
Introduction to the Command Line for Genomics
DininduSenanayake/sklearn_tutorial
Materials for my scikit-learn tutorial
DininduSenanayake/SLURM-examples