DocDer

DocDer's Stars

• COMBINE-lab/salmon

  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

  Language:C++78238839164

• swcarpentry/swcarpentry

  A meta-repository to help navigate the many lessons and repos of the Software Carpentry Community

  569641105

• datacarpentry/R-ecology-lesson

  Data Analysis and Visualization in R for Ecologists

  Language:R31531403506

• Kinggerm/GetOrganelle

  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

  Language:Python2971125354

• carpentries/workshop-template

  The Carpentries Workshop Template

  Language:HTML23780381523

• mossmatters/HybPiper

  Recovering genes from targeted sequence capture data

  Language:Python1151014645

• datacarpentry/datacarpentry.github.io

  Data Carpentry website (archive)

  Language:SCSS100239289

• dereneaton/ipyrad

  Interactive assembly and analysis of RAD-seq data sets

  Language:Jupyter Notebook73756041

• carpentries/lesson-example

  Example lesson using The Carpentries lesson template.

  Language:HTML6412161173

• datacarpentry/R-genomics

  Lesson on data analysis and visualization in R for genomics

  Language:HTML41265076

• datacarpentry/spreadsheet-ecology-lesson

  Data Organization in Spreadsheets for Ecologists

  3819155140

• ghuertaramos/Inat_Images

  Script to download images from inaturalist.org

  Language:R27214

• datacarpentry/organization-genomics

  Project Organization and Management for Genomics

  24296076

• datacarpentry/ecology-workshop

  Ecology Workshop Overview

  20281934

• mikelove/asthma

  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)

  Language:R193111

• lmcai/PhyloHerb

  PHYLOgenomic analysis pipeline for HERBarium specimens

  Language:Python17136

• mcsimenc/PhyLTR

  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons

  Language:Python176319

• smirarab/1kp

  Data and scripts used in the oneKP capstone analyses

  Language:Shell13705

• soltislab/BotanyENMWorkshops

  Using Digitized Collections-Based Data in Research: Applications for Ecology, Phylogenetics, and Biogeography Botany 2023

  7395

• wtesto/Phylogenetic-Diversity

  Species-community matrices from occurrence data in R

  Language:R7203

• mgaynor1/CURE-FL-Plants

  Spring 2020 course material for a Course-based Undergraduate Research Experience (CURE) Florida Plants and Climate Change taught University of Florida.

  Language:R6100

• barrettlab/2021-Genomics-bootcamp

  530

• lindsawi/HybSeq-SNP-Extraction

  Language:Shell4440

• ELReedHerbarium/TargetCaptureWorkshop

  Workshop for developing skills in command line, bioinformatics, and phylogenetics

  Language:Shell317

• sylviakinosian/Pteridium_DDRAD-SEQ_Pipeline

  This is a collection of scripts and a outline for processing ddRADSeq data

  Language:HTML3111

• datacarpentry/DEPRECATED-R-ggplot2-ecology

  DEPRECATED: This repository is now frozen - please see individual lesson repositories.

  Language:R2613

• mgaynor1/BCEENET-DataCleaning

  Data Cleaning Workshop led with Pam Soltis for BCEENET in Summer 2020. & a QUBES Educational Resources.

  Language:R2101

• plantarum/sdm-best-practices

  2200

• datacarpentry/data-carpentry-r-ecology-lesson-datacamp

  160

• mgaynor1/long-winded-scripts

  This is a collection of scripts that took me a large amount of time to put together.

  Language:Jupyter Notebook1100