Pinned Repositories
MVMR.dIVW
dIVW and adIVW estimators for multivariable Mendelian randomization
causeSims
R package for creating simulated summary statistics and testing MR methods
eQTpLot
Visualization of Colocalization Between eQTL and GWAS Data
Fine_mapping
This repository contains scripts used for fine-mapping GWAS locus using eQTL prioritization methods, including Summary-based Mendelian Randomization (SMR) and coloc based colocalization.
friendly2MR
Get_MR
A package for running MR In batches and in parallel quickly
ImageJ-Tutorial
Supplementary for my ImageJ Tutorial
LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
ldsc-corrplot-rg
corrplot of LDSC genetic correlation results
mr-forestplot
DrHushuiqing's Repositories
DrHushuiqing/MR.CUE
DrHushuiqing/MVMR.dIVW
dIVW and adIVW estimators for multivariable Mendelian randomization
DrHushuiqing/TwoSampleMR_-for-personal-use
A fully localized set of Mendelian randomization analysis R language code for dual samples.
DrHushuiqing/pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
DrHushuiqing/MRlap
R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples
DrHushuiqing/single-cell-Mendelian-randomization
DrHushuiqing/MR_tricks
DrHushuiqing/friendly2MR
DrHushuiqing/causeSims
R package for creating simulated summary statistics and testing MR methods
DrHushuiqing/Fine_mapping
This repository contains scripts used for fine-mapping GWAS locus using eQTL prioritization methods, including Summary-based Mendelian Randomization (SMR) and coloc based colocalization.
DrHushuiqing/Overlap
Correcting the overlapping bias in Mendelian Randomization with summary statistics
DrHushuiqing/Get_MR
A package for running MR In batches and in parallel quickly
DrHushuiqing/LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
DrHushuiqing/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
DrHushuiqing/plink2R_for_win
DrHushuiqing/ImageJ-Tutorial
Supplementary for my ImageJ Tutorial
DrHushuiqing/nlmr
Non-linear Mendelian randomization
DrHushuiqing/mrSampleOverlap
Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies
DrHushuiqing/MR_MA
Mendelian Randomization and Mediation analysis
DrHushuiqing/eQTpLot
Visualization of Colocalization Between eQTL and GWAS Data
DrHushuiqing/RNASeqR
📊 An R package of RNA-seq workflow
DrHushuiqing/mr-forestplot
DrHushuiqing/ldsc-corrplot-rg
corrplot of LDSC genetic correlation results
DrHushuiqing/pGWAS_discovery
Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
DrHushuiqing/SMR
The Summary Mendelian randomization (SMR) method
DrHushuiqing/RBD_SMR
Using SMR for eQTL mendelian randomization.
DrHushuiqing/RNAseq-workflow
A repository for setting up a RNAseq workflow