EdinburghGenomics/EGCG-Core

Issues

• Migrate query from the LIMS API

  #118 opened 5 years ago by tcezard
  0

• Functions associated with 'Data Release 1.0' are out of date

  #83 opened 5 years ago by tcezard
  1

• SSL errors in rest_communication

  #105 opened 5 years ago by mwhamgenomics
  1

• Load the species from the reporting app API

  #102 opened 5 years ago by lukbut
  0

• Start catching "gaierror" when sending notification emails

  #112 opened 5 years ago by lukbut
  1

• Asana API updates

  #109 opened 5 years ago by mwhamgenomics
  0

• Rename gender to sex

  #104 opened 6 years ago by mwhamgenomics
  1

• NCBI public methods

  #92 opened 6 years ago by mwhamgenomics
  1

• Reset logging

  #98 opened 6 years ago by mwhamgenomics
  0

• Optional script parameters

  #99 opened 6 years ago by mwhamgenomics
  1

• Remove PBS support

  #100 opened 6 years ago by mwhamgenomics
  0

• Configurable job queues

  #97 opened 6 years ago by mwhamgenomics
  0

• Bash syntax in local_execute

  #85 opened 6 years ago by mwhamgenomics
  0

• Config file is not closed after loading

  #89 opened 6 years ago by tcezard
  0

• Process-safe assertion logging

  #93 opened 6 years ago by mwhamgenomics
  0

• rest_communication __del__ method throws (ignored) errors

  #94 opened 6 years ago by tcezard
  0

• Dependency versions

  #95 opened 6 years ago by mwhamgenomics
  0

• Rest_communication cause SSL error in multiprocessing

  #91 opened 6 years ago by tcezard
  0

• Replace (.) dots in user sample name with underscores

  #87 opened 6 years ago by tcezard
  0

• Docker container cleanup

  #84 opened 6 years ago by mwhamgenomics
  0

• Deprecate get_expected_yield_for_sample

  #71 opened 7 years ago by tcezard
  1

• Add default value for query_dict

  #74 opened 7 years ago by tcezard
  0

• Add retry method to rest_communication

  #75 opened 7 years ago by tcezard
  0

• get_species_name store the results locally even when it is empty

  #80 opened 7 years ago by tcezard
  0

• Handle error in asana notification

  #79 opened 7 years ago by tcezard
  0

• More verbose comparisons in integration tests

  #77 opened 7 years ago by tcezard
  0

• Dot-notated dict querying

  #68 opened 7 years ago by mwhamgenomics
  0

• Rename expected yield to required yield

  #66 opened 7 years ago by tcezard
  1

• Add constants for mapping stat in run element metrics

  #61 opened 7 years ago by tcezard
  1

• Email notification support for generic jinja template

  #69 opened 7 years ago by tcezard
  2

• Broken recursion in archive_management

  #63 opened 7 years ago by mwhamgenomics
  0

• rest_communication: post data as form instead of json

  #59 opened 7 years ago by tcezard
  0

• Failure to register for archiving cause pipeline crash

  #50 opened 8 years ago by tcezard
  0

• Email flexibility

  #46 opened 8 years ago by mwhamgenomics
  0

• DELETE requests

  #35 opened 8 years ago by mwhamgenomics
  1

• More error codes

  #13 opened 8 years ago by mwhamgenomics
  0

• util.move_dir error reporting/handling

  #15 opened 8 years ago by mwhamgenomics
  0

• Cancelling executor jobs

  #28 opened 8 years ago by mwhamgenomics
  1

• Review of executors

  #25 opened 8 years ago by tcezard
  0

• Tolerate absence of config file

  #22 opened 8 years ago by mwhamgenomics
  0

• Add notifications

  #18 opened 8 years ago by mwhamgenomics
  2

• clarity.get_list_of_samples crashes if a sample doesn't exist in the Lims

  #5 opened 8 years ago by mwhamgenomics
  0

• Object-oriented rest_communication

  #8 opened 8 years ago by mwhamgenomics
  0

• Canis lupus familiaris NCBI query returns None

  #1 opened 8 years ago by mwhamgenomics
  0

• Lazy loading of submodules

  #2 opened 9 years ago by mwhamgenomics
  0

• Config flexibility

  #4 opened 9 years ago by mwhamgenomics
  0

• Authentication

  #3 opened 9 years ago by mwhamgenomics
  0