Pinned Repositories
almaan.github.io
cell2module
cell2module: decomposing scRNA and scATAC cell identity into gene modules using count-based Bayesian NMF
EMBO-multi-omics-course
material
Material for course STA426 at UZH, Fall Semester 2020
mcmicro
Multiple-choice microscopy pipeline
modelling_course_FS2020
scGCN
scPotter
sagenet
Spatial reconstruction of dissociated single-cell data
spatialdata
An open and interoperable data framework for spatial omics data
EliHei2's Repositories
EliHei2/segger_dev
a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex imaging datasets, leveraging a unique approach based on graph neural networks (GNNs).
EliHei2/scGCN
EliHei2/almaan.github.io
EliHei2/cell2module
cell2module: decomposing scRNA and scATAC cell identity into gene modules using count-based Bayesian NMF
EliHei2/EMBO-multi-omics-course
EliHei2/material
Material for course STA426 at UZH, Fall Semester 2020
EliHei2/mcmicro
Multiple-choice microscopy pipeline
EliHei2/modelling_course_FS2020
EliHei2/scPotter
EliHei2/multiomic
EliHei2/Persian_rugs
EliHei2/perturb_cast_2023
EliHei2/PhDExpedition
EliHei2/robinsonlabuzh.github.io
Robinson Lab website
EliHei2/scarches
Query to reference mapping for single-cell genomics
EliHei2/scgen
Single cell perturbation prediction
EliHei2/SeqLearn
SeqLearner is a multitask learning module for semi-supervised learning on biological sequences.
EliHei2/SMA2020
EliHei2/SpatialBenchmarking
EliHei2/spatialdata
Modular storage and efficient manipulation of spatial multimodal molecular data in Python
EliHei2/spatialdata-notebooks
EliHei2/spatialdata-sandbox
EliHei2/SpatialMouseAtlas2020
Data processing and analysis scripts for our spatial profiling of embryos using seqFISH
EliHei2/spverse_hackathon_1
EliHei2/squidpy
Spatial Single Cell Analysis in Python
EliHei2/STA426_FS2020