ElizabethBrooks
Check out my website: https://morphoscape.wordpress.com/
http://ieeexplore.ieee.org/document/8114300/https://www.linkedin.com/in/elizabethmbrooks
Pinned Repositories
BIOS60132_FinalProject
Repository for the BIOS60132 final project
BIP_2022
Repository for BIP 2022 scripts and data files.
DGEAnalysis_ShinyApps
Shiny application framework for various expression analyses of count data.
freeCount
R shiny applications for various count data processing, assessment, and analyses.
GBCF_GenomeBrowser
Repository of scripts and files for the GBCF genome browser project.
GBCF_RNASeqAnalysisPipeline
Repository for analysis of RNA-seq data
MLTextAnalysis_NLP
Python scripts for analyzing input Twitter data and classifying their sentiment/relevance based on input training/test data.
NFCDSWorkshop_BeginnersGuide_BioinformaticsDataAnalysis
Primary website for workshop on bioinformatic and biostatistical analysis in the R programming language.
NFCDSWorkshop_Spring2023
In this workshop participants will learn how to perform biostatistical analysis in the R programming language.
TranscriptomeAnalysisPipeline_DaphniaUVTolerance
Bash shell scripts for analyzing short RNA sequence reads.
ElizabethBrooks's Repositories
ElizabethBrooks/TranscriptomeAnalysisPipeline_DaphniaUVTolerance
Bash shell scripts for analyzing short RNA sequence reads.
ElizabethBrooks/DGEAnalysis_ShinyApps
Shiny application framework for various expression analyses of count data.
ElizabethBrooks/NFCDSWorkshop_BeginnersGuide_BioinformaticsDataAnalysis
Primary website for workshop on bioinformatic and biostatistical analysis in the R programming language.
ElizabethBrooks/BIOS60132_FinalProject
Repository for the BIOS60132 final project
ElizabethBrooks/BIP_2022
Repository for BIP 2022 scripts and data files.
ElizabethBrooks/freeCount
R shiny applications for various count data processing, assessment, and analyses.
ElizabethBrooks/GBCF_GenomeBrowser
Repository of scripts and files for the GBCF genome browser project.
ElizabethBrooks/GBCF_RNASeqAnalysisPipeline
Repository for analysis of RNA-seq data
ElizabethBrooks/NFCDSWorkshop_BioinformaticsDataAnalysis
Website for workshop on bioinformatic analysis in the R programming language.
ElizabethBrooks/NFCDSWorkshop_BioinformaticsPipelineDataAnalysis
Website for workshop on biostatistical analysis in the R programming language.
ElizabethBrooks/NFCDSWorkshop_Spring2023
In this workshop participants will learn how to perform biostatistical analysis in the R programming language.
ElizabethBrooks/rPlayground
Playground for creating practice R programming content
ElizabethBrooks/wpPlayground
Playground for creating programming and bioinformatics content for my word press website
ElizabethBrooks/BIOS60573_PopModeling_2020
Repository for notes and code for population modeling dynamics and mechanisms
ElizabethBrooks/ComparativeGenomicsPipeline_Daphnia
Repository for code to perform comparative genomic analyses for Daphnia
ElizabethBrooks/CSCI301_TALabs_WWU
Files for CS 301 labs at WWU, Fall 2016.
ElizabethBrooks/DaphniaGenomics_MultiGenome
Repository for scripts to analyze multiple daphnia species genomes
ElizabethBrooks/DaphniaTranscriptomics_PfrenderLab
Repository for code to perform transcriptomic analyses for Daphnia
ElizabethBrooks/EclosionData_Formatting
Scripts for formatting eclosion data using Bash before plotting in R
ElizabethBrooks/FormatReferenceDatabases_DADA2
Repository for scripts to format reference databases for DADA2.
ElizabethBrooks/GBCF_Chloroplasts
GBCF Romero-Severson Chloroplasts (JRSC24) project repository.
ElizabethBrooks/GBCF_LargeAffyRMA
Repository for large affymetrix data set RMA normalization
ElizabethBrooks/MultiQC
Sets up multiqc container with singularity. Runs fast qc then multi qc on all input files.
ElizabethBrooks/NFCDSWorkshop_Fall2022
In this workshop participants will learn how to perform biostatistical analysis in the R programming language.
ElizabethBrooks/RNA_selection_amplification
Repository for analyzing RNA sequences from In vitro selection-amplification to isolate RNA ligase ribozyme
ElizabethBrooks/SoftwareRepository_Template
Template software repository.
ElizabethBrooks/SP24-BIOS-60132-01
Repository for SP24-BIOS-60132-01 course scripts and information.
ElizabethBrooks/test_website
ElizabethBrooks/UWSISG_Module9_2021
Repository for UW SISG module 9 files
ElizabethBrooks/wpExampleRepository
Example repository for GitHub Version Control Quick Start Guide on the Morphoscape Word Press site