ElizabethBrooks

BIOS60132_FinalProject

Repository for the BIOS60132 final project

BIP_2022

Repository for BIP 2022 scripts and data files.

DGEAnalysis_ShinyApps

Shiny application framework for various expression analyses of count data.

freeCount

R shiny applications for various count data processing, assessment, and analyses.

GBCF_GenomeBrowser

Repository of scripts and files for the GBCF genome browser project.

GBCF_RNASeqAnalysisPipeline

Repository for analysis of RNA-seq data

MLTextAnalysis_NLP

Python scripts for analyzing input Twitter data and classifying their sentiment/relevance based on input training/test data.

NFCDSWorkshop_BeginnersGuide_BioinformaticsDataAnalysis

Primary website for workshop on bioinformatic and biostatistical analysis in the R programming language.

NFCDSWorkshop_Spring2023

In this workshop participants will learn how to perform biostatistical analysis in the R programming language.

TranscriptomeAnalysisPipeline_DaphniaUVTolerance

Bash shell scripts for analyzing short RNA sequence reads.

ElizabethBrooks/MLTextAnalysis_NLP

Python scripts for analyzing input Twitter data and classifying their sentiment/relevance based on input training/test data.

ElizabethBrooks/MatrixLeastSquaresSolver_CholeskyDecomposition_ForwardBackwardSubstitution

Matlab script to solve a system of linear equations with forward and backward substitution, taking advantage of the known zeros of the input symmetric positive definite (SPD) matrix.

ElizabethBrooks/ModEDI_ModelsOfEvolutionWithDevelopmentalInteractions

A software architecture that incorporates a unique mathematical framework derived by Sean Rice into an object-oriented design that is extendable for custom simulations of user specified populations.

ElizabethBrooks/ModEvo_ModelingEvolutionaryTrajectories

An extensible software infrastructure for modeling the evolutionary trajectories of a species, taking into account underlying developmental interactions.

ElizabethBrooks/PrimeNumberCalculator_ClientServerSocketing

C program to determine if a number sent by the server application is prime by the client application using TCP/IP.

ElizabethBrooks/SPDMatrixInverse_CholeskyDecomposition_ForwardBackwardSubstitution

Matlab script and functions to decompose a specified symmetric positive definite (SPD) matrix into a lower triangular matrix, from which the inverse may be found and symmetric positive definitness may be tested.

ElizabethBrooks/SpotifyDataMining_Spring2018

Python and Bash shell scripts, in addition to curl and terminal commands for Spotify genre and track feature data mining analysis with resulting plots and figures.

ElizabethBrooks/autoGrading_sakaiND

Repository for scripts that assist with grading files from Sakai for Notre Dame TAs

ElizabethBrooks/DatabaseProject_UESL_Winter

Database for CWU UESL program; includes an ASP.NET web application with MVC architecture

ElizabethBrooks/DS_PostFix

An example denotational semantics for the PostFix language.

ElizabethBrooks/FileEncryption_Java

Java implementation of DES file encryptor/decryptor

ElizabethBrooks/Interface_Merimaat

Repository for storing addon options.

ElizabethBrooks/Interpreter_PostFix

Prolog interpreter for the PostFix language, based on the PostFix s-expression grammar.

ElizabethBrooks/LetterFrequencyCounter_Forking

C program to determine the frequency of letter pairs (capital and lower case) in a given file, using forking.

ElizabethBrooks/LetterFrequencyCounter_MultiThreading

C program to determine the frequency of letters in a given text file, using multi threading processes.

ElizabethBrooks/MatrixNeighborhoodSearch_MultiThreading

C program to create a matrix of random 0's and 1's, then perform neighborhood searches using multithreading.

ElizabethBrooks/MiniShell

Mini shell for performing basic terminal functions.

ElizabethBrooks/myo.js

Myo javascript bindings

ElizabethBrooks/Parser_PostFix

Prolog parser for the PostFix language, based on PostFix s-expression grammar.

ElizabethBrooks/PeriodicTableTeacher_Advanced

Improved Java application for learning the elements of the periodic table, their atomic weights, and their molecular structures.

ElizabethBrooks/PeriodicTableTeacher_Basic

Java application for learning the elements of the periodic table, their atomic weights, and their molecular structures.

ElizabethBrooks/PersonalWebPage_Basic

ElizabethBrooks/ProbabilityDistributions

Java class for generating a plot of the specified random probability distribution.

ElizabethBrooks/ProcessScheduling_PCB

C program to schedule process contained in a binary file of process control block (PCB) information.

ElizabethBrooks/RecipeCardMaker

Recipe card making application developed in Visual Basic.

ElizabethBrooks/SequenceAlignment_Basic

Python program for comparing an input source sequence to a file of sequences and outputs the best match.

ElizabethBrooks/SOS_PostFix

An example small-step operational semantics for the PostFix language.

ElizabethBrooks/SPDMatrixFactorization_CholeskyDecomposition

Matlab script and functions to decompose a specified symmetric positive definite (SPD) matrix into a lower triangular matrix, from which the determinant and upper triangular form may be found.

ElizabethBrooks/SPDPascalMatrixInverse_CholeskyDecomposition_ForwardBackwardSubstitution

Matlab script and functions to decompose a specified symmetric positive definite (SPD) Pascal matrix into a lower triangular matrix, from which the inverse may be computed with forward and backward substitution.

ElizabethBrooks/VAC_VirtualAvatarCreator

Customizable avatar developed with Blender, and a test environment with challenges and objectives modeled in Unity.