ElizabethBrooks

ElizabethBrooks's Stars

• davidemms/OrthoFinder

  Phylogenetic orthology inference for comparative genomics

  Language:Python71727915189

• rcedgar/muscle

  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

  Language:C++21767624

• hahnlab/CAFE5

  Version 5 of the CAFE phylogenetics software

  Language:C++114714022

• ncbi/egapx

  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation

  Language:Nextflow96203610

• carpentries/styles

  Styles for The Carpentries lessons. No README to avoid merge conflicts with lessons. Demo 👇

  Language:HTML866927697

• datacarpentry/genomics-workshop

  Genomics Workshop Overview

  46296297

• churchill-lab/g2gtools

  Personal diploid genome creation and coordinate conversion

  Language:Python217269

• ElizabethBrooks/TranscriptomeAnalysisPipeline_DaphniaUVTolerance

  Bash shell scripts for analyzing short RNA sequence reads.

  Language:R4201

• NCGAS/Useful-Scripts

  Some useful scripts we use all the time

  Language:Perl42

• ssander5/ND_BIO60132_Sp24

  Language:Shell4

• ElizabethBrooks/DGEAnalysis_ShinyApps

  Shiny application framework for various expression analyses of count data.

  Language:R3201

• GBCF-Bioinformatics/ND_BIO60132_Sp24

  Language:Shell34

• molikd/ND_ICG_2020

  Notre Dame Introduction to Genomics 2020

  3402

• ElizabethBrooks/freeCount

  R shiny applications for various count data processing, assessment, and analyses.

  Language:R2100

• ElizabethBrooks/NFCDSWorkshop_BeginnersGuide_BioinformaticsDataAnalysis

  Primary website for workshop on bioinformatic and biostatistical analysis in the R programming language.

  Language:Python2200

• ElizabethBrooks/BIOS60132_FinalProject

  Repository for the BIOS60132 final project

  Language:Julia1410

• ElizabethBrooks/BIP_2022

  Repository for BIP 2022 scripts and data files.

  Language:R1200

• ElizabethBrooks/GBCF_GenomeBrowser

  Repository of scripts and files for the GBCF genome browser project.

  Language:R1200

• ElizabethBrooks/GBCF_RNASeqAnalysisPipeline

  Repository for analysis of RNA-seq data

  Language:R1202

• ElizabethBrooks/NFCDSWorkshop_Spring2023

  In this workshop participants will learn how to perform biostatistical analysis in the R programming language.

  Language:R1200

• ElizabethBrooks/rPlayground

  Playground for creating practice R programming content

  Language:R1201

• ElizabethBrooks/wpPlayground

  Playground for creating programming and bioinformatics content for my word press website

  Language:R1

• joneslabND/ICB2019_tutorial06

  Repository for use as an example of forking and pull requests

  1203

• jsarro13/CoreTools

  Language:Python1100

• jsarro13/SSRTools

  Language:Python1200

• ndlib-cds/SAGA

  Image Annotations in R, built on taipan (https://srkobakian.github.io/taipan/)

  Language:R1120

• ssander5/GBCF_Shiny

  Shiny apps and shiny server apps from the GBCF

  Language:R1

• ssander5/remove_spacers_from_RAD

  Removing custom spacers for our new RAD library protocol Jun 2024

  Language:Python1

• tracykteal/msu_al340

  Shell tutorial for MSU AL340 course

  Language:Shell13

• uppaluri16/RNAseq-analysis

  Language:Shell11