rcedgar/muscle

Issues

• Error when using -super5 with Muscle3D

  #85 opened a month ago by pentamorfico
  6

• Allow `-` as a stand-in for stdin and stdout.

  #84 opened a month ago by apcamargo
  2

• "illegal hardware instruction" error

  #83 opened a month ago by ori-scala
  9

• increase the threads

  #82 opened 2 months ago by chaoyanggu
  4

• Clarification regarding letterconf usage

  #81 opened 3 months ago by microbearlogist
  2

• Segfault with long sequences

  #31 opened 4 months ago by rcedgar
  2

• automatically reverse-complement nt sequences

  #43 opened 4 months ago by TDDB-limagrain
  2

• Where did profile-profile alignment go in v5?

  #55 opened 4 months ago by rtviii
  3

• @ in output filename required for -perm all with -super5

  #62 opened 4 months ago by DeadlineWasYesterday
  1

• Specifying threads

  #66 opened 4 months ago by bioinfo007
  4

• Segmentation fault (core dumped)riors

  #69 opened 4 months ago by MHassanSaeed
  2

• python version of the code？

  #74 opened 4 months ago by 2000lyn
  1

• Fatal error: allocflat.cpp(15) assert failed: uint64(Size) == Size64

  #75 opened 4 months ago by m-leitman
  1

• segmentation fault muscle -align testing.fa -output alignment.afa

  #76 opened 4 months ago by m-leitman
  3

• Update bioconda-recipe to support osx-arm64

  #80 opened 4 months ago by isaacovercast
  3

• 2 nts are "cut" from the rest.

  #79 opened 5 months ago by 0xorial
  2

• How can I download v5 muscle?

  #78 opened 6 months ago by brilliant2643
  5

• Error in `muscle': free(): invalid next size (normal): 0x00002b09305f4a40 ***

  #77 opened 8 months ago by Oceazh
  0

• Aarch64 muscle built from source fails

  #52 opened 9 months ago by lukaszsobala
  19

• Running time for large numbers of sequences

  #72 opened 9 months ago by Tang-pro
  0

• alignment error when short sequence

  #71 opened 10 months ago by orangeSi
  5

• If is possible to release Muscle V5 version which has no dependence of omp.h?

  #65 opened a year ago by orangeSi
  8

• Request: don't rearrange sequence order

  #45 opened 2 years ago by SethMusker
  2

• Segmentation fault : only a few small sequences to align

  #70 opened a year ago by JulieBorgel
  1

• usorter.cpp(88) assert failed: L >= m_WordLength

  #67 opened a year ago by yifengyuan
  2

• Automatic optimal number of threads

  #64 opened a year ago by dreyes17
  2

• Floating point exception error (core dumped) running super5

  #40 opened a year ago by dnolin13
  7

• double free or corruption (!prev)eriors

  #34 opened a year ago by Adarsh931
  2

• CLUSTALW and MSF format

  #32 opened a year ago by ErisonChen
  4

• allocflat.cpp(15) assert failed: uint64(Size) == Size64

  #44 opened a year ago by NicMAlexandre
  2

• Multiple fasta files error

  #48 opened a year ago by navkahlon240
  1

• Minor: interface change from 3.8 to 5.1 may benefit from more helpful error message

  #46 opened a year ago by jweile
  1

• Segmentation fault while running muscle

  #49 opened a year ago by navkahlon240
  3

• Muscle5.1 alignment error

  #51 opened a year ago by navkahlon240
  1

• Resampling Clarification

  #58 opened a year ago by mcale6
  5

• gap penlty

  #61 opened a year ago by naama68
  2

• how to use it in .net core? any one who can help me? thank you!

  #56 opened a year ago by qiuqingpo
  0

• Memory Object Too Large due to very long sequences

  #63 opened a year ago by bioinfonerd
  2

• Memory Object >4Gb error

  #60 opened a year ago by czhou135
  6

• Can muscle be made to take two or more non-file cli arguments (input streams)? [v3.8]

  #59 opened 2 years ago by rtviii
  1

• *** Error in `muscle': double free or corruption (out): 0x00007ffdb8176090 ***

  #57 opened 2 years ago by Wendy361
  2

• gcc

  #50 opened 2 years ago by besibo
  0

• Fatal error UngappedSeq != m_UngappedSeqs[0] from efa_explode on resampled MSAs

  #38 opened 2 years ago by rcedgar
  1

• Improve multi-threading efficiency?

  #42 opened 2 years ago by lukaszsobala
  2

• dispersion value meaning

  #36 opened 2 years ago by Adarsh931
  12

• Cannot open xxx.fas , errno=2 No such file or directory

  #41 opened 2 years ago by jljy47
  3

• Can you provide test documents？

  #39 opened 2 years ago by HuangseYuanli
  2

• FATAL: kernel too old

  #37 opened 3 years ago by jingydz
  0

• Error while using super5 command

  #33 opened 3 years ago by ChongLC
  1

• Unknown option addconfseqs

  #30 opened 3 years ago by KSteffen
  1