Pinned Repositories
AssemblyByPacBio
Scripts to assign a barcode to a variable region from PacBio SMRT reads
maveLLR
Calculate pathogenicity LLRs for MAVE datasets
popcodeSuite
POPCode Oligo Design tool and web service
screen_pipeline
DMS BarSeq sequence analysis pipeline
yogiroc
Simple ROC and PRC curves
clusterUtil
utility scripts for HPC cluster usage
pacbioTools
pacybara
A pacbio barcode clustering and barseq pipeline
tileseqMave
The RothLab TileSeq analysis pipeline for MAVE
mavevis
visualization for MaveDB
jweile's Repositories
jweile/popcodeSuite
POPCode Oligo Design tool and web service
jweile/screen_pipeline
DMS BarSeq sequence analysis pipeline
jweile/yogiroc
Simple ROC and PRC curves
jweile/AssemblyByPacBio
Scripts to assign a barcode to a variable region from PacBio SMRT reads
jweile/maveLLR
Calculate pathogenicity LLRs for MAVE datasets
jweile/yogitools
Yogi Tools, random collection of useful functions
jweile/bartender-1.1
This bartender version could handle arbitrary length of barcode
jweile/cgir
CGI scripting in R
jweile/crossAlign
Cross-align sequencing run against all possible reference sequences
jweile/diskCleanup
jweile/dmsPipeline
Old RothLab DMS pipeline from 2017
jweile/gatherposters
scripts for processing images for poster sessions in gather town
jweile/harness
Test harness for Probabilistic Network Integration Algorithms
jweile/jweile.github.io
jweile/kiloseq
KiloSeq sequencing analysis pipeline
jweile/lore
A Semantic Data Integration Framework
jweile/maveclin
R package for clinical assessment of MaveDB data
jweile/mthfrModel
jweile/PacRAT
Improving long-read barcode-variant mapping using multiple sequence alignment.
jweile/rlogo
basic weblogo tool for R
jweile/thesis
PhD thesis
jweile/tileseq_mutcount
Re-implement TileSeq mutation counts in python
jweile/tmcurator
A textmining curation system for the RothLab
jweile/transnet
Semantic functionalities for the Synergizer project
jweile/yogilog
simple r logger
jweile/yogiseq
jweile/yogiutil
Miscellaneous useful tools for Java