FADHLyemen

FADHLyemen's Stars

• mims-harvard/TDC

  Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science

  Language:Jupyter Notebook1k27133173

• Murali-group/Beeline

  BEELINE: evaluation of algorithms for gene regulatory network inference

  Language:Python176139253

• zhangyuqing/ComBat-seq

  Batch effect adjustment based on negative binomial regression for RNA sequencing count data

  Language:R16364339

• kanaverse/kana

  Single cell analysis in the browser

  Language:JavaScript142612112

• carmonalab/UCell

  Gene set scoring for single-cell data

  Language:R13754016

• hemberg-lab/SC3

  A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

  Language:R119119655

• GoogleCloudPlatform/rad-lab

  RAD Lab enables users to deploy infrastructure on Google Cloud Platform (GCP) to support specific use cases. Infrastructure is created and managed through Terraform in conjunction with support scripts written in Python. The templates, code, and documentation for each use case are bundled into modules.

  Language:HCL97204883

• imsb-uke/scGAN

  Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks

  Language:Python7752225

• mikelkou/fava

  Functional Associations using Variational Autoencoders

  Language:Jupyter Notebook38133

• AI4SCR/ATHENA

  Language:Jupyter Notebook31246

• jshilts/shilts-et-al-2022-immunoreceptors

  Supporting data files and code for the publication by Shilts et al.

  Language:R30113

• nasa/GeneLab-Training

  A repository for GeneLab Training documentation.

  Language:HTML28308

• SomaLogic/SomaDataIO

  The SomaDataIO package loads and exports 'SomaScan' data via the 'SomaLogic Operating Co., Inc.' proprietary data file, called an ADAT ('*.adat'). The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.

  Language:R2697918

• carpentries-incubator/ml4bio-workshop

  Materials for a workshop introducing machine learning to biologists

  Language:Jupyter Notebook2112978

• TheHumphreysLab/Mouse_DKD_Rx_Atlas

  Language:R16005

• gitter-lab/ml4bio

  A graphical interface for sklearn classification to introduce machine learning to biologists

  Language:Python117292

• icbm-iupui/volumetric-tissue-exploration-analysis

  3D TISSUE CYTOMETRY PLUGIN FOR IMAGEJ DOWNLOAD and INSTALL:

  Language:Java115683

• bsungwoo/spSeudoMap

  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data

  Language:Jupyter Notebook10133

• CostaLab/MOJITOO

  MOJITOO: a fast and universal method for integration of multimodal single cell data

  Language:R10820

• Mangul-Lab-USC/Mangul-Lab-USC.github.io

  Website for Mangul Lab.

  Language:Jupyter Notebook7537

• foocheung/adat

  Web Tool For Navigating and Plotting ADAT files

  Language:R6313

• LeidenCBC/MGC-BioSB-SingleCellAnalysis2021

  Language:HTML6301

• marshalljamie/Kidney-Slide-seq

  Language:Jupyter Notebook61

• zhiqianZ/supCPM

  The algorithm, supervised Capacity Mapping (supCPM), to visualize scRNA-seq data

  Language:MATLAB6120

• tstephie/UMICH-CDS-SR-scRNA-seq-Workshop-2022

  scRNA-seq analysis 2022 workshop hosted by UMICH's CDS-SR

  Language:HTML5114

• Barski-lab/sc-seq-analysis

  CWL toolkit for single-cell sequencing data analysis

  Language:Common Workflow Language4410

• shuaizengMU/G2PDeep_model_legecy

  Language:Python4110

• Mangul-Lab-USC/Introduction-to-bioinformatics-and-biomedical-data-science

  This is a six module graduate-level course covering the fundamentals of transparent and reproducible bioinformatics, targeted towards biomedical students.

  Language:Jupyter Notebook2202

• DToxS/KPMP-Contr-Apps

  The containerized applications for KPMP project

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• ontodev/demo

  OntoDev Demo

  Language:Python1311