Murali-group/Beeline
BEELINE: evaluation of algorithms for gene regulatory network inference
PythonGPL-3.0
Issues
- 8
Not able to run GENIE3 and GRNBOOST2
#92 opened by Aishwarya-Girish - 0
No general command to run SINGE across different OS
#111 opened by kevchen03 - 1
- 0
False success messages posted after erroneous execution of docker commands in initialize.sh
#75 opened by blessyantony9 - 0
- 2
BEELINE Installation Failure on Windows
#104 opened by kevchen03 - 0
Unable to build and run docker containers
#99 opened by code-bele - 1
- 2
where is the tfs+500 and tfs+1000 datasets?
#98 opened by prsigma - 1
RankedEdges.csv file missing
#97 opened by Aishwarya-Girish - 4
PIDC method error and not generating any outputs [ERROR: LoadError: MethodError: no method matching setindex_shape_check(::Int64, ::Int64)]
#93 opened by elhaam - 2
docker image
#54 opened by emre-99 - 10
Terminal/system halt when running "python BLRunner.py --config config-files/config.yaml" in the BEELINE conda environment
#66 opened by shachafl - 0
Reduce Disk Space for ExpressionData.csv Copies
#91 opened by ktakers - 2
- 0
- 0
Update documentation for BLEvaluator.py
#84 opened by packers12345 - 2
BLRunner stuck on "OSError: Timed out trying to connect to 'inproc://172.17.0.2/10/1'" while running arboreto
#48 opened by Oakento - 1
- 1
- 0
- 1
BLPlotter center curated overview plot headers
#71 opened by ktakers - 1
Add legend to BLPlotter curated overview plots
#72 opened by ktakers - 1
- 0
- 1
Make BEELINE installable through a Docker image
#68 opened by tmmurali - 0
- 2
- 1
Some problem of reproducing Fig.5 results
#67 opened by JaneJiayiDong - 4
Fail to reproduce Fig.5 results for human data
#65 opened by jonathan-f - 2
Errors when running initialize.sh
#63 opened by semrau - 2
SCNS ranked edges
#61 opened by TiamHeydari - 1
Fail to run the code
#60 opened by yarkable - 2
Test multiple parameters for the same method?
#59 opened by ekernf01 - 2
- 8
curated datasets
#52 opened by lila167 - 2
Nan value in PIDC results
#56 opened by WWXkenmo - 0
ground truth for example dataset
#57 opened by xPandasx - 1
adding new files
#55 opened by xPandasx - 2
Running without trueEdges (refNetwork.csv)
#53 opened by doncarlos999 - 4
Issues with Beeline on Fedora 27
#51 opened by niclaspopp - 1
Data availability from paper
#49 opened by calebclayreagor - 4
Not able to run SCRIBE
#45 opened by Zengggg - 0
- 3
Not able to run GENIE3 and GRNBOOST2
#46 opened by Zengggg - 3
Not able to run some algorithms
#44 opened by Zengggg - 3
Lacking of "Type" in ground truth network
#43 opened by Hsu-Che-Wei - 5
- 5
SCODE Docker container failing to build
#40 opened by ibebio - 4