Pinned Repositories
ami
AMI Medical Imaging (AMI) JS ToolKit
ChRIS_store
Backend for ChRIS plugin apps store
ChRIS_store_ui
UI for the ChRIS Store
ChRIS_ui
UI for ChRIS
ChRIS_ultron_backEnd
Backend for ChRIS
matlab
Matlab Projects and Snippets
med2image
Converts medical images to more displayable formats, e.g. NIfTI to jpg.
pman
A process management system written in python
pypx
Python wrapper to interact with a PACS (based off DCMTK and PyDicom)
ubuntu-python3
Source for a slim Ubuntu-based Python3 image
FNNDSC / BCH's Repositories
FNNDSC/pl-fetal-surface-extract
Inner cortical plate surface extraction using CIVET
FNNDSC/python-poetry
Container images for poetry
FNNDSC/mni2mz3
Convert MNI surface mesh file formats (.obj, .txt) to Surf-Ice .mz3
FNNDSC/niivue-browser
A NiiVue application for browsing subject data on the filesystem.
FNNDSC/Fetal_Brain_MRI_Surface_Extraction_Pipeline
Fetal brain MRI surface extraction pipeline using CIVET marching-cubes from NIFTI images + QC
FNNDSC/pfdcm
Path-File DCM -- A REST-type service for communicating with a PACS and processing DICOM data.
FNNDSC/ANTsPy
Advanced Normalization Tools in Python
FNNDSC/ChRIS-in-a-box
ChRIS in a box
FNNDSC/chris_plugin
Python ChRIS plugin SDK
FNNDSC/correct_MALP-EM_map
MALP-EM post-processing
FNNDSC/edge-image-automation
FNNDSC/LLDanalysis_ui
FNNDSC/MALPEM
MALPEM whole-brain segmentation framework
FNNDSC/microANTs
A tiny shell script to create tiny container images of ANTs.
FNNDSC/openconnect-bch
A CLI client for Boston Children Hospital's "Pulse Secure" VPN
FNNDSC/pfbridge
`pfbridge` acts as a thin relay between a (typically) clinical client and a ChRIS-workflow-control-service (typically `pflink`)
FNNDSC/pl-ANTs_N4BiasFieldCorrection
ChRIS plugin wrapper for ANTS N4BiasFieldCorrection
FNNDSC/pl-gifit
Outer to inner surface mesh deformation using radial distance map for human fetal MRI
FNNDSC/pl-irtk-reconstruction
IRTK fetal brain MRI reconstruction. https://pubmed.ncbi.nlm.nih.gov/22939612/
FNNDSC/pl-mail
FNNDSC/pl-malpem
MALPEM brain MRI segmentation ChRIS plugin wrapper
FNNDSC/pl-mni2common
Convert MINC volume and MNI .obj surface file formats to NIFTI and Wavefront OBJ respectively.
FNNDSC/pl-pdf2img
A ChRIS DS plugin that converts input PDFs to images (jpg or png)
FNNDSC/pl-TrainSeg
FNNDSC/pl-zerobg
Zero the background of NIFTI volumes.
FNNDSC/pmedquery
Nodejs pubmed query tool
FNNDSC/pubmed_js
A simple no-frills javascript module suitable for PubMed queries.
FNNDSC/ROBEX-container
A container for ROBEX
FNNDSC/runj
FNNDSC/ukftractography-container
Container image for UKFTractography and Slicer4