Pinned Repositories
ami
AMI Medical Imaging (AMI) JS ToolKit
ChRIS_store
Backend for ChRIS plugin apps store
ChRIS_store_ui
UI for the ChRIS Store
ChRIS_ui
UI for ChRIS
ChRIS_ultron_backEnd
Backend for ChRIS
matlab
Matlab Projects and Snippets
med2image
Converts medical images to more displayable formats, e.g. NIfTI to jpg.
pman
A process management system written in python
pypx
Python wrapper to interact with a PACS (based off DCMTK and PyDicom)
ubuntu-python3
Source for a slim Ubuntu-based Python3 image
FNNDSC / BCH's Repositories
FNNDSC/tslide
Quick-n-dirty python engine and html/css/js machinery to rapidly deploy a set of text files into an html slide show.
FNNDSC/brain-masking-tool
FNNDSC/chris-on-edge
FNNDSC/cube-integration-action
Github action for running integration tests with ChRIS_ultron_backEnd
FNNDSC/Display.AppImage
I literally cannot install it!
FNNDSC/ep-expand_from_white_fetal_parameterized
A ChRIS plugin wrapper for modified CIVET expand_from_white where stretch weight and laplacian weight can be scaled by parameters.
FNNDSC/ep-surface_fit_parameterized
A ChRIS plugin for assessing parameters for surface_fit
FNNDSC/example_shapes
A datalad repository containing example volume files in NIFTI and MINC format of geometric shapes.
FNNDSC/fit_surfrs
(A documented,) Rust implementation of CLASP algorithm.
FNNDSC/freeview.AppImage
A minimized, portable freeview executable
FNNDSC/LLDanalysis_ui
FNNDSC/NeSVoR
NeSVoR is a package for GPU-accelerated slice-to-volume reconstruction.
FNNDSC/pflog
A simple script and module for using the `pftel-client` library to communicate with a `pftel` server
FNNDSC/pftag
An opinionated SGML string token parser.
FNNDSC/pftel
Simple telemetry logger for ChRIS
FNNDSC/pftel-client
A client python client library for the pftel telemetry server.
FNNDSC/pl-bichamfer
Bi-directional MINC chamfer ChRIS plugin
FNNDSC/pl-csv2json
A ChRIS app to convert csv generated from 'pl-lld_inference' to JSON
FNNDSC/pl-dcm2mha_cnvtr
A ChRIS plugin to convert dcm files to mha and vice-versa
FNNDSC/pl-img2dcm
A ChRIS app to convert an input image to a DICOM file
FNNDSC/pl-lgd-hemis
WM hemisphere extraction for the "Lana's Group Disorders" project
FNNDSC/pl-lld_inference
A ChRIS plugin that runs an inference model to predict landmark points on leg images
FNNDSC/pl-parmodel-surface
Create surfaces from spherical functions
FNNDSC/pl-smoothness-error
Calculate vertex-wise smoothness error of a .obj surface mesh
FNNDSC/pl-subdiv-minc
Use mincresample to subdivide binary masks
FNNDSC/pl-surfdisterr
Distance error of a .obj surface mesh to a .mnc volume.
FNNDSC/pl-tensorflowapp-sample
Sample Application Plugin for Project ChRIS using Tensorflow
FNNDSC/pl-unstack-folders
A ChRIS plugin to move deeply nested folders to the top-level.
FNNDSC/smoothness-error-datalad
evaluation of adapt_object_mesh
FNNDSC/voxelation-error-datalad