Pinned Repositories
beignet
A standard library for biological research.
dcdfg
equifold
Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
iterative-perturb-seq
Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
polygraph
Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.
pviz
Pviz
scimilarity
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
sVAE
walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)
Genentech's Repositories
Genentech/gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
Genentech/scimilarity
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
Genentech/iterative-perturb-seq
Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
Genentech/polygraph
Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.
Genentech/jmpost
Genentech/psborrow2
psborrow2: Bayesian Dynamic Borrowing Simulation Study and Analysis
Genentech/ringer
RINGER: Rapid Conformer Generation for Macrocycles with Sequence-Conditioned Internal Coordinate Diffusion
Genentech/beignet
A standard library for biological research.
Genentech/GameRank
Genentech/voxmol
Genentech/Islander
Genentech/Perturb-OT
Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.
Genentech/data-detective
Genentech/cremp
CREMP: Conformer-Rotamer Ensembles of Macrocyclic Peptides for Machine Learning
Genentech/spex
Genentech/spex_bundle
Genentech/spex_frontend
Genentech/HLApollo
Genentech/modsculpt
Direct and Indirect Additive Modeling with Model Sculpting
Genentech/quipcell
Fine-scale cellular deconvolution based on Generalized Cross Entropy
Genentech/set-dino
Genentech/SpatialQPFs
Genentech/spex_backend
Genentech/spex_clustering
Genentech/spex_ms_job_manager
Genentech/spex_ms_pipeline_manager
Genentech/spex_segmentation
Genentech/spex_spatial_transcriptomics
Genentech/stats4phc
Performance evaluation for the prognostic value of predictive models intended to support personalized healthcare through predictiveness curves and positive / negative predictive values.
Genentech/TraCSED