Genentech
Dedicated to pursuing groundbreaking science to discover and develop medicines
South San Francisco, CA
Pinned Repositories
equifold
Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
Isosceles
The Isoforms from Single-Cell; Long-read Expression Suite
iterative-perturb-seq
Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
polygraph
Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.
pviz
Pviz
regLM
Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
scimilarity
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
sVAE
walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)
Genentech's Repositories
Genentech/gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
Genentech/scimilarity
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
Genentech/Islander
Genentech/polygraph
Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.
Genentech/Isosceles
The Isoforms from Single-Cell; Long-read Expression Suite
Genentech/pysummaries
Generate beautiful summary tables from pandas dataframes
Genentech/beignet
A standard library for biological research.
Genentech/covtracer
Tools for contextualizing tests, built using covr test traces.
Genentech/psborrow2
psborrow2: Bayesian Dynamic Borrowing Simulation Study and Analysis
Genentech/jmpost
Genentech/pascient
Genentech/checked
batch R CMD check management
Genentech/decima-applications
Genentech/rd2markdown
Genentech/PerturbQA
Genentech/phase1b
Genentech/SpatialQPFs
Genentech/Teal4Real
Teal4Real - use the Teal clinical trial reporting software with Real-world Data or any other one-row-per-patient dataset (not ADaM format)
Genentech/BayesERtools
Genentech/topological_PRM_for_lungHRCT
Lung image analysis pipeline for topological PRM maps
Genentech/BayesERbook
Genentech/stats4phc
Performance evaluation for the prognostic value of predictive models intended to support personalized healthcare through predictiveness curves and positive / negative predictive values.
Genentech/psborrow
An R package for Bayesian Dynamic Borrowing. Check out the successor psborrow2: https://github.com/Genentech/psborrow2
Genentech/genentech.r-universe.dev
Genentech/gReLU-applications
Genentech/SaludLibrary
Genentech/spex_backend
Genentech/spex_ms_job_manager
Genentech/spex_segmentation
Genentech/spex_spatial_transcriptomics