/PBS_qsub_gridsearch

Simple bash script to launch gridsearch qsub jobs on PBS

Primary LanguageShell

PBS qsub gridsearch

General bash scripts to launch python scripts in gridsearch mode.

The process is done by launching a two-stage process

  • First part collects variables to launch qsub jobs iteratively
  • Second part executes your python script with inherited variables from stage 1

Keep in mind that it is custom tailored for executing python scripts inside a singularity container (and using MPI with Horovod in case of multi node setup).

Feel free to ask me anything!

Single node setup

  • Edit run_single.sh
  • Edit and execute launch_single.sh

Multi node setup

  • Edit run_horovod.sh
  • Edit and execute launch_horovod.sh