create a vignette with an example analysis script
jleechung opened this issue · 1 comments
jleechung commented
- include workflow for building a promoter annotation object, running proActiv, identifying alternate promoter usage
- include simple plots of promoter information (promoter categories, positions, tsne)
jleechung commented
vignette implemented with release 0.99.0, documenting a complete step-by-step workflow in identifying active and alternative promoter usage. includes sections on:
- Running proActiv
- Creating promoter annotations
- Identifying alternative promoter usage (with DEXSeq)
- Visualizations
- Promoter activity across conditions (with Gviz)
- Promoter class proportions
- Promoter class by position
- t-SNE plot