calculatePromoterReadCounts were not running
GuangyaoL opened this issue · 1 comments
GuangyaoL commented
hi~
proActiv::calculatePromoterReadCounts(files=files, promoterAnnotation = promoterAnnotion.genecode.dm6.subset,fileType="star")
we counted promoters count by using this function and found that ···Error: 'calculatePromoterReadCounts' is not an exported object from 'namespace:proActiv' ···
jleechung commented
Hi @GuangyaoL,
What version of proActiv are you running?
calculatePromoterReadCounts has been deprecated in the current version of proActiv. Please see the workflow for the latest version here, which runs proActiv in a single command.
Alternatively, you can use the original implementation of proActiv, by downloading this release.