GoekeLab/proActiv

create proActiv wrapper to return summarizedExperiment with promoter ranges

jonathangoeke opened this issue · 1 comments

jonathangoeke commented
  • create proActiv() wrapper to return summarizedExperiment with promoter ranges from input object and named file list
jleechung commented

Implemented with proActiv, which takes in two compulsory arguments:

  • files: path of junction/BAM files as input
  • promoterAnnotation: promoter annotation object

Returns a summarizedExperiment object, with promoter counts and activity as assays, gene expression stored as metadata and promoter-to-gene ID map in rowData.