Pinned Repositories
algorithmics_bases
A collection of basic algorithm problems, their solutions and their associated source codes.
anvage
ANnotation Variants GEnome is a toolkit software to perform routine operations that involve VCF, GFF3 and FASTA genome files
bioinfo_singularity_recipes
A collection of singularity recipies for bioinformatic pipelines.
clean-fastq
A workflow designed to clean fastq files for the SEACONNECT project
global_fish_genetic_diversity
Codes I wrote for the paper : "Global determinants of freshwater and marine fish genetic diversity" Nature Communications, 2020
ReproHackathon
Série de hackathons pour la reproductibilité - Une action MaDICS ReproVirtuFlow
seaConnect--dDocent
GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
speckyman
A platform game developed in JavaScript
vcfsynonymous
read VCF and select synonymous or non-synonymous coding variants
Grelot's Repositories
Grelot/global_fish_genetic_diversity
Codes I wrote for the paper : "Global determinants of freshwater and marine fish genetic diversity" Nature Communications, 2020
Grelot/anvage
ANnotation Variants GEnome is a toolkit software to perform routine operations that involve VCF, GFF3 and FASTA genome files
Grelot/clean-fastq
A workflow designed to clean fastq files for the SEACONNECT project
Grelot/seaConnect--dDocent
GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
Grelot/bioinfo_singularity_recipes
A collection of singularity recipies for bioinformatic pipelines.
Grelot/vcfsynonymous
read VCF and select synonymous or non-synonymous coding variants
Grelot/algorithmics_bases
A collection of basic algorithm problems, their solutions and their associated source codes.
Grelot/ReproHackathon
Série de hackathons pour la reproductibilité - Une action MaDICS ReproVirtuFlow
Grelot/speckyman
A platform game developed in JavaScript
Grelot/aker--beetGenomeEnvironmentAssociation
Codes i wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"
Grelot/bioconda-recipes
Conda recipes for the bioconda channel.
Grelot/blog
My personal static website generated by zola, deployed to github-pages
Grelot/cyberdefense
le challenge 2020 de la défense
Grelot/demort
DEmultiplexing MOnitoring Report Tool. DEMORT evaluates demultiplexed fastq files by computing various metrics.
Grelot/diabetesGenetics--COAT
COverage Analysis Tool have been developed in 2016. It aims to automatically find bad quality regions of coding sequences in a set of sequencing data. It includes a graphical interface.
Grelot/dualrnaseq
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
Grelot/ffq
A tool designed to provide preprocessing for FASTQ files. This tool is developed in C++
Grelot/fromdnatomusic
Convert a DNA sequences into a MIDI track
Grelot/geogendivrdata
data related to the geogendivr package
Grelot/lesdonneesanimees
Scripts to animate data from INSEE
Grelot/machine_learning_demo
Demonstration of my data science skills
Grelot/notebook_geogendiv
A jupyter notebook work using R-package geogendiv
Grelot/reserveBenefit--snpsdata_analysis
Codes i wrote for the paper "genomic resources for Mediterranean fishes"
Grelot/rgeogendiv
Grelot/rna-seq_mapping_workflow
Pipeline for RNAseq data analysis based on reference genome
Grelot/situationPool--westernia
A prototype developed in 2016 of a strategy game in which the user is playing the President of a western country by accepting or rejecting suggestions from advisors.
Grelot/smk_stacks_workflow
RADseq workflow built around STACKS v2 full-parallelized and automated using SNAKEMAKE
Grelot/spyderTrain
testing spyder on windows
Grelot/webAppBase
Grelot/zola
A fast static site generator in a single binary with everything built-in.