Pinned Repositories
biobakery
bioBakery tools for meta'omic profiling
bwa-mem2
bwa-mem2
CRC-cohort-Hainan-China
R code for shotgun metagenomic sequences of CRC patient and healthy cohorts from Hainan, China
CRC-SNP
Establishing a novel colorectal cancer prediction model based on unique microbial single nucleotide variants markers
gt-pro
metapop
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
MetaTiME
MetaTiME: Meta-components in Tumor immune MicroEnvironment
ML_human_gut
QIIME2ChineseManual
QIIME 2中文文档(QIIME 2 Chinese Manual)
run_dbcan
Run_dbcan V2, using genomes/metagenomes/proteomes of any orgaisms(prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
HNUmcc's Repositories
HNUmcc/bwa-mem2
bwa-mem2
HNUmcc/MetaTiME
MetaTiME: Meta-components in Tumor immune MicroEnvironment
HNUmcc/2bRAD-M
2bRAD-M
HNUmcc/BATTER
HNUmcc/ChatGPT
ChatGPT
HNUmcc/CheckM2
Assessing the quality of metagenome-derived genome bins using machine learning
HNUmcc/CHM13
The complete sequence of a human genome
HNUmcc/COPD_multiomics
This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interaction in Chronic Obstructive Pulmonary Disease'.
HNUmcc/EasyMicrobiomeR
Using R language in microbiome analysis
HNUmcc/gatk-snp-calling
Full GATK SNP calling pipeline
HNUmcc/Human_reads_in_metagenome
This is a repository of the codes used in the Tomofuji et al (reconstruction of the personal information from meta genome shotgun sequencing data).
HNUmcc/iLABdb
The analysis flow of iLABdb
HNUmcc/IOM
Trend in microbiology
HNUmcc/LDM
A linear decomposition model for testing microbiome association and mediation
HNUmcc/MAP2B
HNUmcc/Meta_SNV_2157
HNUmcc/MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
HNUmcc/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
HNUmcc/MTD
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
HNUmcc/mycobiome
Pan-cancer mycobiome atlas
HNUmcc/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
HNUmcc/PLSDAbatch
Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.
HNUmcc/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
HNUmcc/SAHMI
SAHMI
HNUmcc/SAIGE-1
Development for SAIGE and SAIGE-GENE(+)
HNUmcc/SCRuB
HNUmcc/tcga_rebuttal
Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
HNUmcc/variant-calling-pipeline-gatk4
Variant Calling Pipeline Using GATK4 and Nextflow
HNUmcc/xlsx2csv
Convert xslx to csv, it is fast, and works for huge xlsx files
HNUmcc/xMarkerFinder
Microbial marker identification from cross-cohort datasets