Pinned Repositories
biobakery
bioBakery tools for meta'omic profiling
bwa-mem2
bwa-mem2
CRC-cohort-Hainan-China
R code for shotgun metagenomic sequences of CRC patient and healthy cohorts from Hainan, China
CRC-SNP
Establishing a novel colorectal cancer prediction model based on unique microbial single nucleotide variants markers
gt-pro
metapop
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
MetaTiME
MetaTiME: Meta-components in Tumor immune MicroEnvironment
ML_human_gut
QIIME2ChineseManual
QIIME 2中文文档(QIIME 2 Chinese Manual)
run_dbcan
Run_dbcan V2, using genomes/metagenomes/proteomes of any orgaisms(prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
HNUmcc's Repositories
HNUmcc/run_dbcan
Run_dbcan V2, using genomes/metagenomes/proteomes of any orgaisms(prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
HNUmcc/bam2fastq
Simple convertor from bam to FASTQ
HNUmcc/Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
HNUmcc/cerebro-paper
Automated next-generation profiling of genomic alterations in human cancers
HNUmcc/ConditionallyRareTaxa
R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities
HNUmcc/dietstudy_analyses
HNUmcc/idba
HNUmcc/kraken2
The second version of the Kraken taxonomic sequence classification system
HNUmcc/megahit
Ultra-fast and memory-efficient (meta-)genome assembler
HNUmcc/Metagenome
Metagenome analysis pipeline
HNUmcc/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
HNUmcc/mOTUs_v2
motus - a tool for marker gene-based OTU (mOTU) profiling
HNUmcc/picrust2
Code, unit tests, and tutorials for running PICRUSt2
HNUmcc/rgi
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
HNUmcc/sickle
Windowed Adaptive Trimming for fastq files using quality
HNUmcc/sourcetracker
HNUmcc/sourcetracker2
SourceTracker2