Pinned Repositories
biobakery
bioBakery tools for meta'omic profiling
bwa-mem2
bwa-mem2
CRC-cohort-Hainan-China
R code for shotgun metagenomic sequences of CRC patient and healthy cohorts from Hainan, China
CRC-SNP
Establishing a novel colorectal cancer prediction model based on unique microbial single nucleotide variants markers
gt-pro
metapop
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
MetaTiME
MetaTiME: Meta-components in Tumor immune MicroEnvironment
ML_human_gut
QIIME2ChineseManual
QIIME 2中文文档(QIIME 2 Chinese Manual)
run_dbcan
Run_dbcan V2, using genomes/metagenomes/proteomes of any orgaisms(prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
HNUmcc's Repositories
HNUmcc/reutils
Talk to the NCBI EUtils
HNUmcc/VirSorter
Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
HNUmcc/Roary
Rapid large-scale prokaryote pan genome analysis
HNUmcc/GMHI_2020
Scripts for generating results in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s41467-020-18476-8.
HNUmcc/MG-RAST
The MG-RAST Backend -- the API server
HNUmcc/CRC-SNP
Establishing a novel colorectal cancer prediction model based on unique microbial single nucleotide variants markers
HNUmcc/humann
HUMAnN 2.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
HNUmcc/biobakery
bioBakery tools for meta'omic profiling
HNUmcc/Host-dependent-co-evolution-of-supplemented-probiotic
The host-dependent co-evolution of supplemented probiotic and the indigenous gut microbiota
HNUmcc/BiGG2020_CrackNAg
HNUmcc/bash2048
Bash implementation of 2048 game
HNUmcc/sra-tools
SRA Tools
HNUmcc/qiime2
Official repository for the QIIME 2 framework.
HNUmcc/gt-pro
HNUmcc/TumorShallowSeq
Cancer prognosis with shallow tumor RNA sequencing
HNUmcc/smetana
SMETANA: a tool to analyse interactions in microbial communities
HNUmcc/QIIME2ChineseManual
QIIME 2中文文档(QIIME 2 Chinese Manual)
HNUmcc/VirFinder
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
HNUmcc/HNU082_GOS_project
HNU082_GOS_project
HNUmcc/Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
HNUmcc/CRC-cohort-Hainan-China
R code for shotgun metagenomic sequences of CRC patient and healthy cohorts from Hainan, China
HNUmcc/miQTL_cookbook
HNUmcc/TCGA-microbiome
Microbial analysis in TCGA data
HNUmcc/pan-genome-analysis
Processing pipeline for pan-genome visulization and exploration
HNUmcc/cooccurrence
Supplementary data for co-occurrence manuscript
HNUmcc/microbiomeViz
Visualize microbiome data with black magic ggtree
HNUmcc/SGVFinder
HNUmcc/msisensor2
Microsatellite instability (MSI) detection for tumor only data.
HNUmcc/picrust
Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests
HNUmcc/aro
The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of an antibiotic