HasiHays
Computational Systems Biology, Systems Medicine
University of ArkansasFayetteville, Arkansas, USA
Pinned Repositories
2020plus
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
awesome-biology
Curated (meta)list of resources for Biology.
awesome-cheminformatics
A curated list of Cheminformatics libraries and software.
awesome_spatial_omics
tools and notes for spatial omics
breast-cancer-sub-types
A novel self-supervised feature extraction method using omics data is proposed which improves classification in most of the classifiers.
CellClassificationMachineLearning
Single Cell Classification using RNA-seq data and Supervised Learning Algorithms
cheminformatics
Facilitates searching, screening, and organizing large chemical databases
Computational-Medicine
PyBioNetGen
A simple CLI for BioNetGen
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
HasiHays's Repositories
HasiHays/hoomd-blue
Molecular dynamics and Monte Carlo soft matter simulation on GPUs.
HasiHays/multinichenetr
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
HasiHays/-ERR-suppresses-metastasis-via-extracellular-matrix-remodeling-in-SCLC
estrogen-related receptor gamma (ERRγ) is overexpressed in metastatic SCLC tumors, and it is positively associated with SCLC progression.
HasiHays/ALRA
Imputation method for scRNA-seq based on low-rank approximation
HasiHays/biomass
A Python Framework for Modeling and Analysis of Signaling Systems
HasiHays/Cancer-Chatbot
Cancer is a complex disease that can be difficult to understand. This project develops a chatbot that can answer questions about cancer using a large language model (LLM). The LLM is trained on a dataset of cancer-related text, so it can answer a some range of questions about cancer.
HasiHays/CFReT_data
Image-based analysis of cardiac fibroblast datasets to uncover proprietary drug impact on reversing fibrosis
HasiHays/d2d
a modeling environment tailored to parameter estimation in dynamical systems
HasiHays/DeepDriveMD-pipeline
DeepDriveMD: Deep-Learning Driven Adaptive Molecular Simulations
HasiHays/idep
Integrated Differential Expression and Pathway analysis
HasiHays/idepGolem
HasiHays/kickstart.nvim
A launch point for your personal nvim configuration
HasiHays/llama.cpp
Port of Facebook's LLaMA model in C/C++
HasiHays/matchengine-V2
Open source engine for matching cancer patients to precision medicine clinical trials (V2).
HasiHays/mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics simulations.
HasiHays/MOFAcell
Code used for muti cellular factor analysis
HasiHays/Molecular-Dynamics-Simulation
Sample codes for my book on molecular dynamics simulation
HasiHays/Molly.jl
Molecular simulation in Julia
HasiHays/ncem
Learning cell communication from spatial graphs of cells
HasiHays/openmm
OpenMM is a toolkit for molecular simulation using high performance GPU code.
HasiHays/pasmopy
Patient-Specific Modeling in Python
HasiHays/PhysiCell
PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
HasiHays/pyfish_tools
This repository contains various algorithms for analyzing image-based datasets, with a primary focus towards fluorescent in situ hybridization data.
HasiHays/pyPESTO
python Parameter EStimation TOolbox
HasiHays/RASPA2
Classical molecular simulation code
HasiHays/robotics_python
Robotics Mathematical modeling and theory with Python (learning through extensive numerical simulations and animations.)
HasiHays/scikit-learn
scikit-learn: machine learning in Python
HasiHays/SEDR_analyses
HasiHays/seek
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
HasiHays/shinygo